Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12520g00003 ATGCTGTTCAAATATGTTGAAACTTGTTTTGGTGCAAAACCCGGCCCATATCAGTATCTCACGTCTTGGAGGGACAAAAATGATCCAGCTGAAGGTGAGTTTTCTTTTATGATCGATACAAAGGGCTATCCTCAACAAGTTACTACAAACGGAACTAAAATTTTTTACAGCACAGGGCCTTGGAATGGCTATATTTTCAGTGGTGTTTCTTCGGACAGAATGTTCAGATTCTTGAATTTCTCTCTTGAGTTCACTAACAAAGGTGTTTCTTATGGATATGAAACGTTAGACAGTTCAATGCTTAGTAGAACAATGCTTAAGCTCAATCCAGGAGGGGCTACAGAGCGTGTTCTATGGTCAAAAGAAAGACAAAGTTGGGATACTGTATACAGTTATCCACTAGATCAGTGTGAATATTTTTCCACTTGTGATGTCAACTCTATCTGCAATGTTAATAATGTTCCAATATGTGAATGGTTGCAAGGATTCACACCAAAGTTTCAAGCAAAGTGGGATTCTCATGATTGGTCTGGTGGTTGTGTCAGAAGAACAAATTTAAGTTGTGATTATGGAGATTGGTTTAAGAAGTACACAGGAATAAAGCTTCCTGAAACGTCTTCTTCCTGGTTTAACAGGAGCTTGAGCCTTAAGGAATGTAAGACACTGTGTTTGAGAAATTGCTCTTGTACTGCGTATGCAAATTCAGATATCAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGCGGACATGAGAAAACACCCTGATCGAGGGCAAGAAATTCATATACGACTGTCATTCTCTGAACGTGATCCAAGAAGTTATAAGAAGAGACTTGCGAGGATTGTGGTAGGACTTGTTTCATTCATAGTTGTACTAACAATTCTTGTGTGGGCGACTTCAAAACGTATGAAAGGGATGAAGCAACCCAAGCCAGTAGTGAAAAAAGCTATTCCCTGGAAGCACATGATGGAGAAGGAAAACAGCAGCTTGCCGAAAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAACACAAACAAGTTAGGAGAAGGTGGTTTTGGAACAGTACACCAGGGAAAGTTGATAGATGGACAAGAGATTGCAGTCAAGAGACTTTCAAAAACTTCGAGACAGGGAACTGAGGAGTTTAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGACGAGAAGTTGTTGATATATGAATTCATGCCCAACAGAAGTTTGGATTACTTTATTTTTGATACAATGCGAGGCAAATTACTAGATTGGGCTAAGCGGTTGAAAATTATCGAGGGAATAGCTAGGGGTCTTATGTATCTTCATCAAGATTCCAGACTTAGAATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGACAATATGACTCCAAAAATATCAGATTTTGGATTAGCAAGAATATTTGGAATAGATCAAGCTGAAGCAAATACAAGCAGAGTGATGGGAACGCATGGCTATATGCCTCCAGAATATGCAGTGCATGGTTCTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGTGTAATTGTTATTGAGATGATTAGTGGAAGGAAGAATCGTGGATTTCATGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATGGATGAGATATTAGATGATGGTGGAGACTTATGTTTAGAAATACTGCGGTGCATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAACATGTCATCTGTTGTTTTGATGTTAAATGGTGAGAAGTTGCTACCAAAACCAAGCGAACCTGGCTTCTATATAGGAAAAGATAATATTGCTGACACTGAATCTTCAAAGCAATATGAAAAGTGTTCAGTAAATGAAGTTTCAATTTCATCCTTAGAGGTGCGATAG 2010 0.3846 MLFKYVETCFGAKPGPYQYLTSWRDKNDPAEGEFSFMIDTKGYPQQVTTNGTKIFYSTGPWNGYIFSGVSSDRMFRFLNFSLEFTNKGVSYGYETLDSSMLSRTMLKLNPGGATERVLWSKERQSWDTVYSYPLDQCEYFSTCDVNSICNVNNVPICEWLQGFTPKFQAKWDSHDWSGGCVRRTNLSCDYGDWFKKYTGIKLPETSSSWFNRSLSLKECKTLCLRNCSCTAYANSDIRDGGSGCLLWFHDIADMRKHPDRGQEIHIRLSFSERDPRSYKKRLARIVVGLVSFIVVLTILVWATSKRMKGMKQPKPVVKKAIPWKHMMEKENSSLPKMFDFSTIDIATNHFSNTNKLGEGGFGTVHQGKLIDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTMRGKLLDWAKRLKIIEGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMTPKISDFGLARIFGIDQAEANTSRVMGTHGYMPPEYAVHGSFSTKSDVFSFGVIVIEMISGRKNRGFHDPHHHLLNLLGHAWRLWNEERPLELMDEILDDGGDLCLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPKPSEPGFYIGKDNIADTESSKQYEKCSVNEVSISSLEVR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12520g00003 669 ProSiteProfiles PAN/Apple domain profile. 188 269 IPR003609 -
Vium12520g00003 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Vium12520g00003 669 SMART ntp_6 189 268 IPR003609 -
Vium12520g00003 669 CDD PAN_AP_plant 184 269 - -
Vium12520g00003 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 187 268 - -
Vium12520g00003 669 Pfam Domain of unknown function (DUF3403) 629 668 IPR021820 GO:0004674
Vium12520g00003 669 SUPERFAMILY Protein kinase-like (PK-like) 336 634 IPR011009 -
Vium12520g00003 669 Gene3D Transferase(Phosphotransferase) domain 1 426 630 - -
Vium12520g00003 669 Gene3D Hepatocyte Growth Factor 184 266 - -
Vium12520g00003 669 Pfam PAN-like domain 188 254 IPR003609 -
Vium12520g00003 669 CDD STKc_IRAK 356 625 - -
Vium12520g00003 669 Gene3D Phosphorylase Kinase; domain 1 323 425 - -
Vium12520g00003 669 Pfam S-locus glycoprotein domain 56 167 IPR000858 GO:0048544
Vium12520g00003 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 138 649 - -
Vium12520g00003 669 ProSiteProfiles Protein kinase domain profile. 350 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12520g00003 669 SMART serkin_6 350 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12520g00003 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 316 425 - -
Vium12520g00003 669 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Vium12520g00003 669 Pfam Protein tyrosine and serine/threonine kinase 353 620 IPR001245 GO:0004672|GO:0006468
Vium12520g00003 669 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12520g00003 Vium-Chr12520 13069 17254 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12520g00003 338 639 Receptor kinase-like Gene Family AT4G05200 57.426 2.66e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium12520g00003 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12520g00003 - - vvo:131659752 881.708