Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12520g00001 TTTGGTGCAAAACCCGGCCCATATCAGTATCTCACGTCTTGGAGGGACAAAAATGATCCAGCTGAAGGTGAGTTTTCTTTTATGATCGATACAAAGGGCTATCCTCAACAAGTTACTACAAACGGAACTAAAATTTTTTACAGCACAGGGCCTTGGAATGGCTATATTTTCAGTGGTGTTTCTTCGGACAGAATGTTCAGATTCTTGAATTTCTCTCTTGAGTTCACTAACAAAGGTGTTTCTTATGGATATGAAACGTTAGACAGTTCAATGCTTAGTAGAACAATGCTTAAGCTCAATCCAGGAGGGGCTACAGAGCGTGTTCTATGGTCAAAAGAAAGACAAAGTTGGGATACTGTATACAGTTATCCACTAGATCAGTGTGAATATTTTTCCACTTGTGATGTCAACTCTATCTGCAATGTTAATAATGTTCCAATATGTGAATGGTTGCAAGGATTCACACCAAAGTTTCAAGCAAAGTGGGATTCTCATGATTGGTCTGGTGGTTGTGTCAGAAGAACAAATTTAAGTTGTGATTATGGAGATTGGTTTAAGAAGTACACAGGAATAAAGCTTCCTGAAACGTCTTCTTCCTGGTTTAACAGGAGCTTGAGCCTTAAGGAATGTAAGACACTGTGTTTGAGAAATTGCTCTTGTACTGCGTATGCAAATTCAGATATCAGAGATGGTGGGAGTGGTTGTTTGCTTTGGTTCCATGACATTGCGGACATGAGAAAACACCCTGATCGAGGGCAAGAAATTCATATACGACTGTCATTCTCTGAACGTGATCCAAGAAGTTATAAGAAGAGACTTGCGAGGATTGTGGTAGGACTTGTTTCATTCATAGTTGTACTAACAATTCTTGTGTGGGCGACTTCAAAACGTATGAAAGGGATGAAGCAACCCAAGCCAGTAGTGAAAAAAGCTATTCCCTGGAAGCACATGATGGAGAAGGAAAACAGCAGCTTGCCGAAAATGTTTGATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAACACAAACAAGTTAGGAGAAGGTGGTTTTGGAACAGTACACCAGGGAAAGTTGATAGATGGACAAGAGATTGCAGTCAAGAGACTTTCAAAAACTTCGAGACAGGGAACTGAGGAGTTTAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGACGAGAAGTTGTTGATATATGAATTCATGCCCAACAGAAGTTTGGATTACTTTATTTTTGATACAATGCGAGGCAAATTACTAGATTGGGCTAAGCGGTTGAAAATTATCGAGGGAATAGCTAGGGGTCTTATGTATCTTCATCAAGATTCCAGACTTAGAATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGACAATATGACTCCAAAAATATCAGATTTTGGATTAGCAAGAATATTTGGAATAGATCAAGCTGAAGCAAATACAAGCAGAGTGATGGGAACGCATGGCTATATGCCTCCAGAATATGCAGTGCATGGTTCTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGTGTAATTGTTATTGAGATGATTAGTGGAAGGAAGAATCGTGGATTTCATGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCACTGGAGTTAATGGATGAGATATTAGATGATGGTGGAGACTTATGTTTAGAAATACTGCGGTGCATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAACATGTCATCTGTTGTTTTGATGTTAAATGGTGAGAAGTTGCTACCAAAACCAAGCGAACCTGGCTTCTATATAGGAAAAGATAATATTGCTGACACTGAATCTTCAAAGCAATATGAAAAGTGTTCAGTAAATGAAGTTTCAATTTCATCCTTAGAGGTGCGATAG 1983 0.3858 FGAKPGPYQYLTSWRDKNDPAEGEFSFMIDTKGYPQQVTTNGTKIFYSTGPWNGYIFSGVSSDRMFRFLNFSLEFTNKGVSYGYETLDSSMLSRTMLKLNPGGATERVLWSKERQSWDTVYSYPLDQCEYFSTCDVNSICNVNNVPICEWLQGFTPKFQAKWDSHDWSGGCVRRTNLSCDYGDWFKKYTGIKLPETSSSWFNRSLSLKECKTLCLRNCSCTAYANSDIRDGGSGCLLWFHDIADMRKHPDRGQEIHIRLSFSERDPRSYKKRLARIVVGLVSFIVVLTILVWATSKRMKGMKQPKPVVKKAIPWKHMMEKENSSLPKMFDFSTIDIATNHFSNTNKLGEGGFGTVHQGKLIDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTMRGKLLDWAKRLKIIEGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMTPKISDFGLARIFGIDQAEANTSRVMGTHGYMPPEYAVHGSFSTKSDVFSFGVIVIEMISGRKNRGFHDPHHHLLNLLGHAWRLWNEERPLELMDEILDDGGDLCLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPKPSEPGFYIGKDNIADTESSKQYEKCSVNEVSISSLEVR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12520g00001 660 CDD STKc_IRAK 347 616 - -
Vium12520g00001 660 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12520g00001 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vium12520g00001 660 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Vium12520g00001 660 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672|GO:0006468
Vium12520g00001 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 417 622 - -
Vium12520g00001 660 SMART ntp_6 180 259 IPR003609 -
Vium12520g00001 660 Pfam Domain of unknown function (DUF3403) 620 659 IPR021820 GO:0004674
Vium12520g00001 660 SMART serkin_6 341 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12520g00001 660 Gene3D Transferase(Phosphotransferase) domain 1 417 621 - -
Vium12520g00001 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 178 259 - -
Vium12520g00001 660 CDD PAN_AP_plant 175 260 - -
Vium12520g00001 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 129 640 - -
Vium12520g00001 660 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 307 416 - -
Vium12520g00001 660 SUPERFAMILY Protein kinase-like (PK-like) 327 626 IPR011009 -
Vium12520g00001 660 ProSiteProfiles PAN/Apple domain profile. 179 260 IPR003609 -
Vium12520g00001 660 Pfam PAN-like domain 179 245 IPR003609 -
Vium12520g00001 660 Pfam S-locus glycoprotein domain 47 158 IPR000858 GO:0048544
Vium12520g00001 660 Gene3D Hepatocyte Growth Factor 175 257 - -
Vium12520g00001 660 Gene3D Phosphorylase Kinase; domain 1 314 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12520g00001 Vium-Chr12520 85 3286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12520g00001 329 630 Receptor kinase-like Gene Family AT4G05200 57.426 2.63e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium12520g00001 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12520g00001 - - vvo:131659752 881.708