Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12512g00001 ATGGCGGTTCCAGGGAGGCGCAACGGCATGAACGACGACGAAGAGGACATAGACGATCACGCCCTTTTCGAGGAAGAAGGTTTCGTCGAAGACTACTCCGATACCCCTCCTCACCTCCGCGACCTCTCCGCCGCCGCGCAGGTTGGCGACATCAACGCCCTCCGCCTCGCTCTAGATAACCTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACTGCTCTTCATTTGACATGTTTGTATGGCCATTTGGCTTGTGCCCAGCTGCTAATAGAAAGAGGAGCAAACATTGAGGCTAAGGATGAAGACGGTGCAATTCCTTTGCATGATGCTTGTGCTGGAGGATTTACTGAGATAGTCCAACTGCTACTAAACAGAGCAAATAACGCAGAACATATGAAGAGAATGCTGGAATCAGTTGATTCTGAGGGTGATACTCCTCTTCATCACGCAGCAAGAGGTGAGCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGGGCATCGTCCACAAAGGAAAACTTATACGGAAAGACCCCGGCAGATTTACCTGATCAGAACACAGATGCTCGGAGTTTGCTTCACGCTGCCGTCCCTGCCATGGCATGTTAA 615 0.5024 MAVPGRRNGMNDDEEDIDDHALFEEEGFVEDYSDTPPHLRDLSAAAQVGDINALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLACAQLLIERGANIEAKDEDGAIPLHDACAGGFTEIVQLLLNRANNAEHMKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGASSTKENLYGKTPADLPDQNTDARSLLHAAVPAMAC 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12512g00001 204 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Vium12512g00001 204 ProSiteProfiles Ankyrin repeat region circular profile. 104 130 - -
Vium12512g00001 204 Gene3D - 36 200 IPR036770 -
Vium12512g00001 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 37 201 - -
Vium12512g00001 204 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Vium12512g00001 204 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Vium12512g00001 204 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Vium12512g00001 204 Pfam Ankyrin repeats (3 copies) 104 172 IPR002110 GO:0005515
Vium12512g00001 204 SMART ANK_2a 71 100 IPR002110 GO:0005515
Vium12512g00001 204 SMART ANK_2a 104 133 IPR002110 GO:0005515
Vium12512g00001 204 SMART ANK_2a 144 173 IPR002110 GO:0005515
Vium12512g00001 204 FunFam BRCA1-associated RING domain protein 1 36 203 - -
Vium12512g00001 204 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Vium12512g00001 204 SUPERFAMILY Ankyrin repeat 34 184 IPR036770 -
Vium12512g00001 204 Pfam Ankyrin repeat 71 102 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12512g00001 64 200 Ion Channels AT2G25600 30.120 1.69e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12512g00001 - - gmx:100527544 360.533