Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12500g00013 ATGGGTGGCATAGGTAAGACAACCATTGCTCGTGCTATATTTGATAAATGTTCTCTTCAGTATGATGGCTGCTGTTTCTTCAATGTAAGAGAAGAATTGGAACGGCATGGATTCAGCAATTTACGAGAGAGGCTCATTTATGAACTACTTGAAGGAGAAGGTCTCCATACAAACAAAGCAAGATTCTTCAGTTCTGCTCTAAGAATGCTGGGTCGGAAAAAAGTTATGGTAGTGCTTGATGATGTAAATACTTCTGAAGAATTAAGGTATCTGGTCACAAAACCAGTTTGCTTCGGTGCAGGGAGTAGGGTGATAATGACAAGTAGAGATCAGGACGTGCTTACAAGTGGAGGACTTGATCAAATTCATGAGGTCAAGGAAATGAAACCTCTTGATTCTCTCAAGCTCTTCTGCTTGATTGCCTTCAATGAAAGCCAACCCAAAATGGGATATGAAAAACTAACTGAAGAGGTGCTTAAAATCGCCCAGGGTAATCCCTTAGCCTTAAAAGTTTTAGGTGCAGAATTCCATTCCAGAAGTACTATAAACACATGGAAGTGTGCATTAAGCAAATTCAAGAAGTATCCCAATGAGAAAATTCAAAGTGTGTTAAGATTCAGTTATGATGGACTGCACGAAGTAGAGAAAAAGGCCTTCCTAGATATTGCATTCTTTTTCCAAGAAGACACCAAAGCCTATGTTATAGAGCAACTAGATGCATGGGGACTTCATGGAGCTAGTGGAGTGGAGGTTCTCCAACGGAAAGCTCTTATAACAGTTTCAAATGAGAATATAATACAAATGCATGACCTGATACGACAAATGGGTTGCGAAATAGTTCGTCAAGAATGTATTACACATCCAGGAAGACGCACCCGATTGAGGGATAAAGAGGAAGTATACAATGTATTGAGGTATAAGCTGGGAACCGATAAGGTGGAGGGCATGCAAGTAGATGTGTTTCGAATTAAAGATTTGTCGCTGAAAGTAGGAACTTTTAAAAAGATGCCTTGTCTGAGATTTCTGAAATTTTATCTCCCCGATGATAATCTTTTCCTGCCGCCAAACCCGGATGGAACGTTATGGTATGAAAAACGTCACTTCCCATTGCTTTTATCTGCATGGTGCAAAGACCTCATGAGAGTTGCATGTGAGATTCAGATAAAATGTGTTGACTACGTTTATTTTGATGGTTACTCACATTCTTCCCTAACATCGACGCTAAGAAACCGTGGAAGGGAAATACGATCGTCGACCTCGATATCATTGACCGAACTAACTGGTTCCCCCGGGGATCTTGAATGCTCAGATATGCTTGATCAACAATTTAAGATTCTGACTGATGGGCTACTTTGTCTGAGATCAACTTATTATCTTAAGCTTTCTAAGAGCACGGGGCAAGACAGTGGAAAACCCAAGTTGCACGTTCTGTTTGACAGCTTAAGGTTTTATGAACGAATATCTGTGGGCAAGTTGAAGAACTCCGACATCGAGGGTAATCGGATGTTGTTTCTTTATTTTGCAGGTTTTAACTTTCTATTTCGTCCCTTTCTTCTTAGGAGACCTTGGTTTCATTTCCTCTTTTCTTTTCGTTTTGCATTCTTCTGCACTTTATTTTTGTATCTTTTATGGAAAATGATCCTTTGA 1647 0.3989 MGGIGKTTIARAIFDKCSLQYDGCCFFNVREELERHGFSNLRERLIYELLEGEGLHTNKARFFSSALRMLGRKKVMVVLDDVNTSEELRYLVTKPVCFGAGSRVIMTSRDQDVLTSGGLDQIHEVKEMKPLDSLKLFCLIAFNESQPKMGYEKLTEEVLKIAQGNPLALKVLGAEFHSRSTINTWKCALSKFKKYPNEKIQSVLRFSYDGLHEVEKKAFLDIAFFFQEDTKAYVIEQLDAWGLHGASGVEVLQRKALITVSNENIIQMHDLIRQMGCEIVRQECITHPGRRTRLRDKEEVYNVLRYKLGTDKVEGMQVDVFRIKDLSLKVGTFKKMPCLRFLKFYLPDDNLFLPPNPDGTLWYEKRHFPLLLSAWCKDLMRVACEIQIKCVDYVYFDGYSHSSLTSTLRNRGREIRSSTSISLTELTGSPGDLECSDMLDQQFKILTDGLLCLRSTYYLKLSKSTGQDSGKPKLHVLFDSLRFYERISVGKLKNSDIEGNRMLFLYFAGFNFLFRPFLLRRPWFHFLFSFRFAFFCTLFLYLLWKMIL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12500g00013 548 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 367 IPR044974 GO:0006952
Vium12500g00013 548 Gene3D - 1 118 IPR027417 -
Vium12500g00013 548 Pfam NB-ARC domain 1 209 IPR002182 GO:0043531
Vium12500g00013 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 222 IPR027417 -
Vium12500g00013 548 Gene3D - 128 212 IPR042197 -
Vium12500g00013 548 PRINTS Disease resistance protein signature 69 83 - -
Vium12500g00013 548 PRINTS Disease resistance protein signature 487 503 - -
Vium12500g00013 548 PRINTS Disease resistance protein signature 162 176 - -
Vium12500g00013 548 SUPERFAMILY "Winged helix" DNA-binding domain 199 301 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12500g00013 Vium-Chr12500 62563 64570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12500g00013 3 345 WRKY Transcription Factor Family AT4G12020 35.244 2.73e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12500g00013 - - vum:124821432 1059.67