Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12500g00011 ATGGGAGGTGACAGTGCCGTTGTCGAGGAATCCGAAGGAGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCTTTCAAGGATCTCGTTGCTCGCAATTGCGACGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAAGACGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACATACTAATTCAACTGGTGGAACCAGTACTAGCAGCACTGATACCAATACCGCCACTAATAACGCCAGAGGTGCTGTTGCGAATGAAGGTGGGAGTTTAGGAGGGCCTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGCTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATCATGAATAATCCACAGATGCAAGAGCTGATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAACACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCCAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCTAATACTAACCCACTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACTACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGCGGCCTTAATCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACCGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGACGTAATGCAAAATCCAGAATTCCTTCGAATGTTTTCATCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTATGTCTCAGCTTGGTCAGCAGCAGTCAACACGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGTATGTTTGGTGGACTTGGAGCAGGTAG 1425 0.4526 MGGDSAVVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVHTNSTGGTSTSSTDTNTATNNARGAVANEGGSLGGPGFGASLFPGLGINGTGGNALFGDGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNTRRSSTTGVDARQQGPTGLGGLNLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRMFSSPETLQQLLSFQQALMSQLGQQQSTRTNEQLGIGDVIEYVWWTWSR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12500g00011 474 PANTHER UBIQUILIN 16 452 IPR015496 -
Vium12500g00011 474 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Vium12500g00011 474 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
Vium12500g00011 474 FunFam Ubiquitin domain-containing protein DSK2b 13 99 - -
Vium12500g00011 474 MobiDBLite consensus disorder prediction 268 355 - -
Vium12500g00011 474 SUPERFAMILY Ubiquitin-like 15 102 IPR029071 -
Vium12500g00011 474 SMART CBM 401 436 IPR006636 -
Vium12500g00011 474 SMART CBM 193 232 IPR006636 -
Vium12500g00011 474 SMART CBM 357 398 IPR006636 -
Vium12500g00011 474 SMART CBM 139 180 IPR006636 -
Vium12500g00011 474 MobiDBLite consensus disorder prediction 268 343 - -
Vium12500g00011 474 Gene3D - 13 99 - -
Vium12500g00011 474 CDD Ubl_Dsk2p_like 16 88 - -
Vium12500g00011 474 Gene3D - 188 246 - -
Vium12500g00011 474 SMART ubq_7 16 87 IPR000626 GO:0005515
Vium12500g00011 474 FunFam Ubiquitin domain-containing protein DSK2b 190 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12500g00011 Vium-Chr12500 43960 55343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12500g00011 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 7.04e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12500g00011 K04523 - gmx:100776447 764.607