Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12500g00009 ATGGGAGGTGACAGTGCCGTTGTCGAGGAATCCGAAGGAGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCTTTCAAGGATCTCGTTGCTCGCAATTGCGACGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAAGACGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACATACTAATTCAACTGGTGGAACCAGTACTAGCAGCACTGATACCAATACCGCCACTAATAACGCCAGAGGTGCTGTTGCGAATGAAGGTGGGAGTTTAGGAGGGCCTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGCTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATCATGAATAATCCACAGATGCAAGAGCTGATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAACACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCCAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCTAATACTAACCCACTTCCAAATCCTTGGTCCTCTACTGCTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACTACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGCGGCCTTAATCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACCGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGACGTAATGCAAAATCCAGAATTCCTTCGAATGTTTTCATCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTATGTCTCAGCTTGGTCAGCAGCAGTCAACACGGGAATCTGGTCAAACCGGCGGAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGTATGTTTGGTGGACTTGGAGCAGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTGTTGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAA 1626 0.4545 MGGDSAVVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVHTNSTGGTSTSSTDTNTATNNARGAVANEGGSLGGPGFGASLFPGLGINGTGGNALFGDGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTAGGAQNNTRRSSTTGVDARQQGPTGLGGLNLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRMFSSPETLQQLLSFQQALMSQLGQQQSTRESGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12500g00009 541 MobiDBLite consensus disorder prediction 446 464 - -
Vium12500g00009 541 MobiDBLite consensus disorder prediction 268 342 - -
Vium12500g00009 541 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
Vium12500g00009 541 SMART uba_6 499 537 IPR015940 -
Vium12500g00009 541 FunFam Ubiquitin domain-containing protein DSK2b 190 246 - -
Vium12500g00009 541 Gene3D - 481 541 - -
Vium12500g00009 541 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Vium12500g00009 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Vium12500g00009 541 SMART CBM 400 435 IPR006636 -
Vium12500g00009 541 SMART CBM 356 397 IPR006636 -
Vium12500g00009 541 SMART CBM 193 232 IPR006636 -
Vium12500g00009 541 SMART CBM 139 180 IPR006636 -
Vium12500g00009 541 Gene3D - 13 99 - -
Vium12500g00009 541 Gene3D - 188 246 - -
Vium12500g00009 541 MobiDBLite consensus disorder prediction 446 466 - -
Vium12500g00009 541 CDD Ubl_Dsk2p_like 16 88 - -
Vium12500g00009 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Vium12500g00009 541 SMART ubq_7 16 87 IPR000626 GO:0005515
Vium12500g00009 541 FunFam Ubiquitin domain-containing protein DSK2b 482 540 - -
Vium12500g00009 541 SUPERFAMILY Ubiquitin-like 15 102 IPR029071 -
Vium12500g00009 541 FunFam Ubiquitin domain-containing protein DSK2b 13 99 - -
Vium12500g00009 541 PANTHER UBIQUILIN 16 536 IPR015496 -
Vium12500g00009 541 CDD UBA_PLICs 499 537 - -
Vium12500g00009 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Vium12500g00009 541 MobiDBLite consensus disorder prediction 268 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12500g00009 Vium-Chr12500 43657 55338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12500g00009 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.77e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12500g00009 K04523 - gmx:100776447 923.309