Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12500g00008 ATGGGAGGTGACAGTGCCGTTGTCGAGGAATCCGAAGGAGTCAGCGTCAACATCAATGTTCGCTGCTCTAACGGCTCTAAGTTTTCCGTTCAGACTTCCGTTGATTCCATCGTTAGTTCTTTCAAGGATCTCGTTGCTCGCAATTGCGACGTACCCGTCGAACAACAACGCCTCATTTACAAGGGTCGCATTTTGAAAGACGATCAAACCCTCCGAAGCTACGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGTTTTGTACATACTAATTCAACTGGTGGAACCAGTACTAGCAGCACTGATACCAATACCGCCACTAATAACGCCAGAGGTGCTGTTGCGAATGAAGGTGGGAGTTTAGGAGGGCCTGGCTTTGGAGCTTCACTGTTCCCTGGACTAGGTATCAATGGGACTGGGGGAAATGCTTTATTTGGTGACGGATTTCCTGATCTAGAGCAGATGCAGCAACCATTTCTTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATGAATAATCCTGAGATAGTGCGGAATCTTATCATGAATAATCCACAGATGCAAGAGCTGATGGATCGAAACCCTGAGTTAGCACACATACTTAATGATCCTAGTACTCTTCGTCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAACACAGATAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAATTTCAGGGACTCATGGTGGCCATGCCAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCTAATACTAACCCACTTCCAAATCCTTGGTCCTCTACTGGTACTGGAGGTGCTCAAAATAACACCAGAAGGTCGTCGACTACTGGTGTGGATGCCAGGCAGCAAGGACCTACTGGCTTAGGCGGCCTTAATCTGCCAGACCTTGAAAACATGCTGGGTGGCAATGCCATGCCAGATGCTTCTTTATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAATCAGATTCTGGGTGCTAATACCGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGACGTAATGCAAAATCCAGAATTCCTTCGAATGTTTTCATCACCTGAGACATTGCAGCAACTCTTGTCATTCCAGCAAGCTCTTATGTCTCAGCTTGGTCAGCAGCAGTCAACACGCAGGGAATCTGGTCAAACCGGCGGAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGTATGTTTGGTGGACTTGGAGCAGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCTCTTGTTGCTACTTCGGGTAATGTTCATGCAGCAGTTGAACGACTATTGGGGAACTCTGGTCAGTAA 1632 0.4547 MGGDSAVVEESEGVSVNINVRCSNGSKFSVQTSVDSIVSSFKDLVARNCDVPVEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGFVHTNSTGGTSTSSTDTNTATNNARGAVANEGGSLGGPGFGASLFPGLGINGTGGNALFGDGFPDLEQMQQPFLSNPNLVREIMNSPAMQNLMNNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAISGTHGGHARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNTRRSSTTGVDARQQGPTGLGGLNLPDLENMLGGNAMPDASLLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLRDVMQNPEFLRMFSSPETLQQLLSFQQALMSQLGQQQSTRRESGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12500g00008 543 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
Vium12500g00008 543 FunFam Ubiquitin domain-containing protein DSK2b 190 246 - -
Vium12500g00008 543 Pfam UBA/TS-N domain 501 537 IPR015940 -
Vium12500g00008 543 MobiDBLite consensus disorder prediction 447 466 - -
Vium12500g00008 543 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Vium12500g00008 543 CDD UBA_PLICs 501 539 - -
Vium12500g00008 543 Gene3D - 188 246 - -
Vium12500g00008 543 MobiDBLite consensus disorder prediction 268 355 - -
Vium12500g00008 543 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 495 540 IPR015940 -
Vium12500g00008 543 SMART uba_6 501 539 IPR015940 -
Vium12500g00008 543 SMART CBM 401 436 IPR006636 -
Vium12500g00008 543 SMART CBM 193 232 IPR006636 -
Vium12500g00008 543 SMART CBM 357 398 IPR006636 -
Vium12500g00008 543 SMART CBM 139 180 IPR006636 -
Vium12500g00008 543 MobiDBLite consensus disorder prediction 268 343 - -
Vium12500g00008 543 CDD Ubl_Dsk2p_like 16 88 - -
Vium12500g00008 543 PANTHER UBIQUILIN 16 538 IPR015496 -
Vium12500g00008 543 SMART ubq_7 16 87 IPR000626 GO:0005515
Vium12500g00008 543 Gene3D - 13 99 - -
Vium12500g00008 543 MobiDBLite consensus disorder prediction 447 467 - -
Vium12500g00008 543 SUPERFAMILY Ubiquitin-like 15 102 IPR029071 -
Vium12500g00008 543 FunFam Ubiquitin domain-containing protein DSK2b 13 99 - -
Vium12500g00008 543 Gene3D - 483 543 - -
Vium12500g00008 543 SUPERFAMILY UBA-like 497 539 IPR009060 GO:0005515
Vium12500g00008 543 FunFam Ubiquitin domain-containing protein DSK2b 484 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12500g00008 Vium-Chr12500 43657 55339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12500g00008 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 9.15e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12500g00008 K04523 - gmx:100776447 927.546