Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12488g00001 GTCCTCCTTGTGCTTGATGATATTAGCAAAAAAGAACAATTGCATGCAACTGCTGGAGGACTTGATTGGTTTGGCCCTGGTAGCATCATCATCATAACAACAAGGGATAAGCATTTGTTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGGAATTAACTTTATGGAAGCCCTTGAATTGTTTAAGTGGAATGCTTTCAAAAACAAAGAAGTTGATCCATGTTACAAGGAAGTCACAGAGCGTGCAATGTATTATGCCAATGGCCTTCCATTGGCTTTGGAAACGATAGGCTCGAACTTGTTTGGCAAAACCTTGGATGAATGGGAATCTGCGTTAGAAACTTATGAGAGAATTCCAAATAGAGATGTTCAGGAAGTTCTTAAAGTTAGCTATGATAGTTTGGATGCTTATGAGAAAGAAATATTCCTTGACATAGCTTGCTTCTTTAGAAGATGCTCTCTTGGATACGTTACAGATAAGCTTGAAGCAAGAGGATTTCCTCCAAAATTTGGTCTGAGAGTGCTAGAAGAAAAATCTCTCATTAAAATTCGGGAATGTCCACATGAAACTGTGACAATGCATGACATGATTCGGTGTATGGGAAAAGAAATAGTTAGACAACAAAAACCTCTGCCTCACAAACGGAATAGGATATGGTTTTACGAGGACGTTGTTTGTGTGTTGGAGAAAAACATGGAAAATGATAAAATTGAAGCGGTGATGTTGGAGATGCCAGAACACCAAGAAGAAATGCAATGCACTCCAAAGTTTGGAAAAATGAAAAGCTTACGGATGCTTATTATAGAAAAGAAGGTTAGCTTTCTTGGAAGCCCTGCTACTCTGCCAAACAGTTTGAGAGTGCTGGAATGGCGTGGATATCCTGCAACTTCTTTACCGAGCAATTTTCATTTCAAGAATCTTGTCATACTCAACTTGTCACACAGTTACTTTGGATGGTACAAACCACTACAGAATTCAAAGGTTTTGAGACACTTGATTATCATAGGTTGTAAGAATATTAGACGAATACCTGACATCTCTGGTTTCCCCAATTTGACAAAACTTTGTGTTCGTGAATGCACAAATCTGTTTGAGATTCATGATTCAGTTGGATCTTTACTTCATCTTAAAGAGTTTTGTGCTGAAGGATGTACCAAGCTCACAATTGGTCCAAGTCGCATAAAGTTGATATCTTTGGAGCATCTGTGCTTTCGGGGCTGCAGCAGTCTTGTCATGTTTCCAGAAGTATTGGCTCCAATGCACAAACTAAAGTACGTTGACTTGGGAGGAACTGGCATAAGAAATCTGCCACCATCAATGCAAAATCTTAAGGGTATTAAAGTATTGTCCATGGGGAAAGGCCAAATGCTTGAAATTAATGAATCGTCCAATTTCTTTCAAAACCTGCCAATGTTCTTTCCTAATTTAGAAACATTATATTTACAAAACTTAGACATTACAATCCTTCCTGCCAGCATTGAAGAATGTCACTCTTTGAAATTTCTGCACGTCACCAACTGCAAGAAGCTTCAAGAAATTAGAGGACTTCCATTGAATATTAATCAGTTCTACGCAGCAAACTGTTCTGTTAAAGCCAACTCTTTGATATTAAAACTCAGGCAGGCCATTGATTGTGGTGCAATGGGAATCTGTGTTCTTCCAGGTCGGAAAATCCCAGAATTGTTTGACCACTCTAGCAGGGGAAACTCTGTAAGTTTTTGGTTTCGTAAAGAATTGCCCACTCTGGCTGTGTGTGCTATTATTGGAGTCTGGGATAATGTCAAGCCTCCTTTCGTTGCCTTCTTTAGGTTCGTTGTTGGAGTAGAAAAGAATATTTATAAGTGTGTTTGTTGTTTCCGTTGTCGTAATATACGTTGGACAACTGAGGATAGTCACATAATTATACTCAACTCTCGAAATGATTTTCAACATACGTTGAATACGGATATTCAGACAGTGCTTCTGACGAATGAGTGGATTCCTGGGAAAATACTGTTGACGATACGTCCAAAAAGTGATTTAGGTAAGTCGGGAGAAATCAGAAGGACAGGAGTTTATGTAAATCGAACACTTAGTAGCATGGAGGATGTTCGATTCGAAGATCCTTATGATCTCAATAAAGCAAGTGCTATAGAAAATAAACTTGTGTTGCTTGGTGAGGCATCTGATACACAACAACAAGCACAATCCTCTGCTTTATTCAACCTCACAACCTCATTAGAATCTCTTATTGGTGAACAACCTTTGAATTATGAGTACAACAATTCATATTCAAAAGAATCGGCATCCACTGTTGACTCCAATAACCAAGGAGTACTTGTAGATGATCAACCAATATTAGCTCCAAGTTCTGCAGAGACGCAAAATGCTGAGGCCAAAAGAGAAATGGCACAACTGATATCGGAAGTTTCAAGTGAGTTCACAGCTCAAGTAAGTATGAAAATTGAGTCAACAGCATCCCAATCACCTAAAGTTGATGAAGTAGAAGCAGGTTTGGAAACTCAGAATCAGTTCAGAAATACTATGGTTTTGGAAAACCAGATACACCAAAGGCTGACCAGGATTAAGAAAATGAAAGAAGAATTAGGAGAGAAAATCAGTGCTATTAAAGCCGACATCTCTGCCATTGAAGCTAACAACTCTTCCATTAAAGCTAACATCTCAGACATTAAAGCTATATTTTTGCAGATTGATCAGAGGTTCATACGGTGA 2718 0.3859 VLLVLDDISKKEQLHATAGGLDWFGPGSIIIITTRDKHLLDVHGVQKQYMVGGINFMEALELFKWNAFKNKEVDPCYKEVTERAMYYANGLPLALETIGSNLFGKTLDEWESALETYERIPNRDVQEVLKVSYDSLDAYEKEIFLDIACFFRRCSLGYVTDKLEARGFPPKFGLRVLEEKSLIKIRECPHETVTMHDMIRCMGKEIVRQQKPLPHKRNRIWFYEDVVCVLEKNMENDKIEAVMLEMPEHQEEMQCTPKFGKMKSLRMLIIEKKVSFLGSPATLPNSLRVLEWRGYPATSLPSNFHFKNLVILNLSHSYFGWYKPLQNSKVLRHLIIIGCKNIRRIPDISGFPNLTKLCVRECTNLFEIHDSVGSLLHLKEFCAEGCTKLTIGPSRIKLISLEHLCFRGCSSLVMFPEVLAPMHKLKYVDLGGTGIRNLPPSMQNLKGIKVLSMGKGQMLEINESSNFFQNLPMFFPNLETLYLQNLDITILPASIEECHSLKFLHVTNCKKLQEIRGLPLNINQFYAANCSVKANSLILKLRQAIDCGAMGICVLPGRKIPELFDHSSRGNSVSFWFRKELPTLAVCAIIGVWDNVKPPFVAFFRFVVGVEKNIYKCVCCFRCRNIRWTTEDSHIIILNSRNDFQHTLNTDIQTVLLTNEWIPGKILLTIRPKSDLGKSGEIRRTGVYVNRTLSSMEDVRFEDPYDLNKASAIENKLVLLGEASDTQQQAQSSALFNLTTSLESLIGEQPLNYEYNNSYSKESASTVDSNNQGVLVDDQPILAPSSAETQNAEAKREMAQLISEVSSEFTAQVSMKIESTASQSPKVDEVEAGLETQNQFRNTMVLENQIHQRLTRIKKMKEELGEKISAIKADISAIEANNSSIKANISDIKAIFLQIDQRFIR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12488g00001 905 Coils Coil 861 881 - -
Vium12488g00001 905 SUPERFAMILY L domain-like 242 556 - -
Vium12488g00001 905 SUPERFAMILY "Winged helix" DNA-binding domain 124 230 IPR036390 -
Vium12488g00001 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 147 IPR027417 -
Vium12488g00001 905 Gene3D - 1 49 IPR027417 -
Vium12488g00001 905 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 519 IPR044974 GO:0006952
Vium12488g00001 905 Gene3D Ribonuclease Inhibitor 250 396 IPR032675 -
Vium12488g00001 905 Gene3D Ribonuclease Inhibitor 397 536 IPR032675 -
Vium12488g00001 905 Pfam NB-ARC domain 2 136 IPR002182 GO:0043531
Vium12488g00001 905 Gene3D - 54 137 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12488g00001 Vium-Chr12488 57 4435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12488g00001 1 561 WRKY Transcription Factor Family AT5G45050 30.565 2.84e-57 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12488g00001 - - vum:124821418 1803.1