Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12484g00001 GACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCCTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAGATGAAATGTGGTAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATCAGATCCTTATGGACATTTCAGGGATGGTTCATGTGAGCTGTTCCCAAGAGAAATGGTCGAGTCCTGGCAAGAGCGAATAAATAATCGCCAGGTAGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTGAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAACATTCCGAGGGCTAG 513 0.425 DRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWQERINNRQVVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12484g00001 170 ProSiteProfiles TRIAD supradomain profile. 1 89 IPR044066 -
Vium12484g00001 170 Pfam IBR domain, a half RING-finger domain 26 70 IPR002867 GO:0008270
Vium12484g00001 170 PANTHER UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED 8 74 - -
Vium12484g00001 170 Gene3D - 5 112 - -
Vium12484g00001 170 SUPERFAMILY RING/U-box 22 78 - -
Vium12484g00001 170 FunFam RBR-type E3 ubiquitin transferase 4 113 - -
Vium12484g00001 170 SMART ibrneu5 18 83 IPR002867 GO:0008270
Vium12484g00001 170 SUPERFAMILY RING/U-box 114 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12484g00001 21 91 ARIADNE family AT3G27710 33.803 8.60e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12484g00001 K11971 - vum:124821414 377.867