Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1247g00001 ATGAGCAGCAACACTGCGGTCAATTCCCCTGGATTCCTCGGCTCAAGCAACATCAGTGGCTACAGTTATGGCATAGGAATCTCCATTGGAATCCTGTTGCTCATCATAACTATCACTCTAACTTCTTACTTCTGCACCAGAACACATGTCTCGTTTGCTGCAGCTACCAGGAACAGAAGATTCACTCCGAATGTTCTTCAACCAGACCACTCTGTGGTTGATGTCAGTTTGGATGAAGCCACCATTCTCAGTTATCCAACCCTTCTATACTCTGAAGCCAAGGCTCGGAAGCGTGATTCCACTGCAACATGTTGCTCCATTTGTTTGGCAGATTACAAGGACACTGATATGCTTCGCATGCTACCTGATTGTGGACACCAATTCCACCTCAAATGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACGCCCCTCTCAACTCCACTGGCCGAGGTAGTTCCGTTTGCTATCATACGAGATTCATAA 516 0.4632 MSSNTAVNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRTHVSFAAATRNRRFTPNVLQPDHSVVDVSLDEATILSYPTLLYSEAKARKRDSTATCCSICLADYKDTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPFAIIRDS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1247g00001 171 CDD RING-H2_EL5-like 104 147 - -
Vium1247g00001 171 Pfam Ring finger domain 105 147 IPR001841 -
Vium1247g00001 171 SUPERFAMILY RING/U-box 104 152 - -
Vium1247g00001 171 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Vium1247g00001 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vium1247g00001 171 SMART ring_2 105 146 IPR001841 -
Vium1247g00001 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 161 IPR045899 -
Vium1247g00001 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1247g00001 Vium-Chr1247 4913 5581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1247g00001 14 166 C3H Transcription Factor Family AT5G06490 50.857 9.41e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1247g00001 - - gmx:100811799 270.781