Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1246g00007 ATGGAGCGAATGAGAGGATGGCACGTGGCATGGGGTTTTGATTTGGGTGGTAGTGAGGGTGAGGTTATGGGGTGTGGTCCCCAGGAATTTGTGGTGAAGGAGGAAGAAACAGTGACAGGTGGTGGTGGTGGTTCATCATCATCATCATCTTCTTCTTTGAGCTTTACTCCACAACCAATGGAAGGGTTGAACGAAGTGGGTACCCCACCCTTTTTGACAAAGATCTATGACATGGTCGAAGATCATTCCACAGATTCTGTTGTGTCATGGAGCACTTCTTGCAATAGCTTTGTTGTGTGGGATTCTCACAAGTTTTCTACTACACTTCCTTCCCTCGTTAGCTTCAAGCACATGTGTCTTCCTGCTTTAACTCTCTACCTTCAAAGCACGCCAATTTCTCCACTTCATTCGCCAGCTCAACACTATTTTCCTTCTTTTGCTGGTTTAAGTGTTCAAACTCTTTGTGTTGGTCGCGCCTTGTTGCTTGGCTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAGAGGCACTTATTGAAGGGCATAAAGAGAAGAAGAAGAGTGTCACAGAGCATGCAAGAAAGAGGAGTAGGAGGAGCATGTGTTGAAGTGGGAGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGATAGGAACATTCTGATGGCAGAAATTGTGAGGTTGAGGCACCAACAGCTGAACTCAAGAGACCAATTGAGTGCCATGGAAACCAGATTGCAAGCCACAGAGAATAAACAGCAAAAGATGACCATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGTCCACAAGACCCCCCAAAGTAGAGAAATCTTGGATGCTGAAATCAATGGGAAAAGGAGACTAATTGCTGGCCAGAGTTTGGAGAACCTGCAACAAGATGATCCTGTAACATTGATGGACTATTCAAAACAACAAGATTTGGCAACTATGGAGCCTGAGATGAACACTTTTTTCTCACCAGCTTTTGATAGTGAACTTGGTCATGAAATCAAAGAGTCTGCACTAGATTCTGATATAACAGCTAGTCAGACTTATTTTGGAGACACAATATTGGAGGACTTGCTCATTGAAGACTTGGTCACTGGGGATCCAAAGGATGAAGTTATCATTGGTGATTGTTCCCAGATTGATGTTCCAGTGGAGGATTTGGTAGCAGACCCCGATGATTGGAATCATATGGACCATTCAGGATCAAAACCATAG 1272 0.4355 MERMRGWHVAWGFDLGGSEGEVMGCGPQEFVVKEEETVTGGGGGSSSSSSSSLSFTPQPMEGLNEVGTPPFLTKIYDMVEDHSTDSVVSWSTSCNSFVVWDSHKFSTTLPSLVSFKHMCLPALTLYLQSTPISPLHSPAQHYFPSFAGLSVQTLCVGRALLLGFRKVDPDRWEFANEGFLAGQRHLLKGIKRRRRVSQSMQERGVGGACVEVGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMETRLQATENKQQKMTIFLAKALKNPSFMQQLVHKTPQSREILDAEINGKRRLIAGQSLENLQQDDPVTLMDYSKQQDLATMEPEMNTFFSPAFDSELGHEIKESALDSDITASQTYFGDTILEDLLIEDLVTGDPKDEVIIGDCSQIDVPVEDLVADPDDWNHMDHSGSKP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1246g00007 423 Pfam HSF-type DNA-binding 71 193 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1246g00007 423 Gene3D - 64 194 IPR036388 -
Vium1246g00007 423 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 57 329 IPR027725 -
Vium1246g00007 423 SMART hsfneu3 67 193 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1246g00007 423 MobiDBLite consensus disorder prediction 40 61 - -
Vium1246g00007 423 MobiDBLite consensus disorder prediction 35 62 - -
Vium1246g00007 423 SUPERFAMILY "Winged helix" DNA-binding domain 68 193 IPR036390 -
Vium1246g00007 423 Coils Coil 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1246g00007 Vium-Chr1246 69841 80668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1246g00007 57 417 HSF AT2G26150 42.623 1.07e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium1246g00007 HSF_DNA-bind 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1246g00007 K09419 - gmx:100778558 417.542