Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1246g00006 ATGAAAATGGTGTTCATGCAATTGGAATGGCCATGTGTAGCCATAATCACCCTCGTGGCTTTGCTGGGAGCCTTATTGGGTTATCTTTATGGGCCCTATTGGGGGCTCAGGAAAGTTCCAGGCCCACCTTCTCTCCCTCTTCTAGGACACCTTCACTTGCTCGCCAAATATGGCCCTGATGTCTTCTCCCACCTTGCCAACCAATATGGCCCAATTTACAGATTTCACATGGGAAGACAACCATTAATCTTGGTAGCAGATCCAGAGCTTTGTAAAGAGGTGGGAATTAAGAAATTTAAAGACATTCCAAACAGAAGCATTCCCTCTCCTATTTCGGCCTCACCTCTTCATCAAAAAGGACTCTTCTTCACCAGGGACTCACGATGGTCAACCATGAGAAACACCATATTGTCAGTGTATCAACCCTCACACTTGGCTAGTTTAGTGCCAATGATGCAATCATTCATAGAATCTGCAACAGAAAATCTTGACACCCCAAATGAGGACATGATCTTTTCTGATCTTTCCCTAAGGCTAGCGACTGATGTGATAGGAGAGGCAGCATTTGGTGTCAACTTTGGCCTCTCTGAGCCCCATTCAGTTTGTGAATCAATCAAGAGTGTTAGCAGTGTGAAAAATGGTGATGATGATGATGATGATGATGAAGTATCAGATTTCATCAACCAACACATCTACTCCACAACACAACTTAAGATGGACTTGTCTGGTTCCTTCTCCATTATACTTGGTCTACTTGCTCCAATACTTCAGGAGCCATTTAGGCAGATTCTAAAGAGAATACCAGGCACAATGGACAGGAAAATAGAGAGTATTAATGAGAAACTGAGTGGTCGTCTTGATGAGATTGTCAATAGGAGAATGAAGGACAAGAACCGAACTTCAAAAAACTTCTTATCACTAATTTTGAATGCAAGAGAATCAAAGCTTGTATCAGAAAATGTGTTTTCACCTGAATACATTAGTGCGGTTACTTATGAGCACTTACTTGCTGGTTCAGCTACCACAGCCTTTACCTTGTCATCCATTGTCTACTTGGTTGCTGGTCACCTAGAAGTTGAGAAAAAGTTACTTCAAGAGATTGATGAATTTGGTCCATCTGATAAGATTCCCACTGCCCAAGATCTGCATGATAGTTTTCCTTATCTTGATCAGGTGATTAAAGAGGCCATGAGGTTTTACACTGTCTCCCCATTGGTTGCAAGAGAAACATCAAATGAGGTAGAGATAGGAGGTTACCTTCTTCCAAAGGGGACGTGGGTATGGTTAGCTATTGGAGTTCTAGCAAAAGATCCAAGAAATTTTCCTGATCCAGAGAAGTTTAAACCAGAGAGGTTTGACCCCAATTGTGAAGAAATGAAACTAAGGCATCCTTATGCATTCATACCATTTGGAATTGGTCCTAGGGCATGTATTGGACAGAAATTTTCCCTACAAGAGCTCAAGCTTACTCTGATTCATTTGTACCGAAAGTATGTGTTTCGTCATTCCCTTAACATGGAAAAGCCTGTAGAAATGGAATATGGAATGGTTCTCAACTTCAAGCATGGTGTCAAGCTTAGAGTCATAAGAAGAACACAATAA 1602 0.4151 MKMVFMQLEWPCVAIITLVALLGALLGYLYGPYWGLRKVPGPPSLPLLGHLHLLAKYGPDVFSHLANQYGPIYRFHMGRQPLILVADPELCKEVGIKKFKDIPNRSIPSPISASPLHQKGLFFTRDSRWSTMRNTILSVYQPSHLASLVPMMQSFIESATENLDTPNEDMIFSDLSLRLATDVIGEAAFGVNFGLSEPHSVCESIKSVSSVKNGDDDDDDDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLAPILQEPFRQILKRIPGTMDRKIESINEKLSGRLDEIVNRRMKDKNRTSKNFLSLILNARESKLVSENVFSPEYISAVTYEHLLAGSATTAFTLSSIVYLVAGHLEVEKKLLQEIDEFGPSDKIPTAQDLHDSFPYLDQVIKEAMRFYTVSPLVARETSNEVEIGGYLLPKGTWVWLAIGVLAKDPRNFPDPEKFKPERFDPNCEEMKLRHPYAFIPFGIGPRACIGQKFSLQELKLTLIHLYRKYVFRHSLNMEKPVEMEYGMVLNFKHGVKLRVIRRTQ 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1246g00006 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Vium1246g00006 533 Gene3D Cytochrome P450 30 533 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 430 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 326 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 346 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 390 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS P450 superfamily signature 477 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS P450 superfamily signature 337 354 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 PANTHER THROMBOXANE-A SYNTHASE 13 532 - -
Vium1246g00006 533 SUPERFAMILY Cytochrome P450 33 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1246g00006 533 Pfam Cytochrome P450 40 517 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1246g00006 Vium-Chr1246 57043 60922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1246g00006 77 531 Cytochrome P450 AT2G26170 72.308 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1246g00006 K20771 - gmx:100805689 905.59