Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1246g00005 ATGGGTGCATCTGGAAAATGGGTGAAGGCGTTGATCGGACTCAACAGCAAGAATGAACTTGGAGGGAAGAAGAAGAAGTGGAGACTGTGGAAGAGTTCTTCTGCAGGGGAGAACAGATCTCAAGACTTCGAGTATTGCAGTGTGGCTTCCGATTCATTCACCGCTGCAGTGGCCACAGTTGTCAGAGCTCCACCTAAGGATTTCAAACTCCTCAAGCAAGAATGGGCTGCCACCCGAGTTCAAACTGCTTTCCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTTGTGAGGAAGCAGGCTGCAGTCACACTGAGGTGCATGCAGGCCTTGGTTCGTGTCCAGGCACGTGTGAGGGCGCGGCGCGTGCGAATGTCCATGGAGGGGCAAGCAGTTCAAAACATGCTAAATGAACGCCGCACCAAGGCTGAACTCAACAAGGAAGCAGAGGATGGTTGGTGTGATAGCAAAGGATCTCTGGAACATGTCAAGACAAAACTACAAATGAGGCAAGAGGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCCCAAAAGCAATGGAGATCAACCACCATTTCAAATTCAAGAGCAAACACCTCTTTGAACAAGCAAGAAATAGACAAGGCTAACTGGGGATGGAGTTGGTTGGAACGTTGGATGGCAGCAAAGCCATGGGAGAGTAGATTGATGGAACAAACTCGTCATCAAGCTGATGCCACAGAGAAAACTCCTCCTCCTCCTCCAAAGAAATGCGTGGACCCCACAAATTCGAAAAATATTTCAGAACCATGCAGTGTCAAAGTCAGAAAGAACAATGTTACCACAAGGATTTCAGCTAGACCTCCTCATATTGGCCAAGCCACTCGTTTGTCCTCTAGTCCTAGTTCTGAGTTTCACTACGATGAGAGCTCTAATTCATCTTCAATATGCACATCCATGACACCAATATCTGGGAGTGTATCTTTGCCTTGTGAGAGGACAGAGGATAGTAACAACAGTACTACTAGGCCTAGTTACATGAACCTGACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAGTCATCAATACAACAGATCTCAGAGGCAACAGTCCATGGATGAGTTCCAGTTTCTCAAAAGGACAGCGGTTTTCTCAAATGGAGATGCCAAAAGCACTGGTGCTTCTGACCCTTCAACCAACTTTTCTAGGCCACTTTACCTACCCACCTACATGGATAAGAAGCCACGGTGA 1284 0.479 MGASGKWVKALIGLNSKNELGGKKKKWRLWKSSSAGENRSQDFEYCSVASDSFTAAVATVVRAPPKDFKLLKQEWAATRVQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKAELNKEAEDGWCDSKGSLEHVKTKLQMRQEGAFKRERAIAYSLAQKQWRSTTISNSRANTSLNKQEIDKANWGWSWLERWMAAKPWESRLMEQTRHQADATEKTPPPPPKKCVDPTNSKNISEPCSVKVRKNNVTTRISARPPHIGQATRLSSSPSSEFHYDESSNSSSICTSMTPISGSVSLPCERTEDSNNSTTRPSYMNLTESTKAKQKTSSHQYNRSQRQQSMDEFQFLKRTAVFSNGDAKSTGASDPSTNFSRPLYLPTYMDKKPR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1246g00005 427 MobiDBLite consensus disorder prediction 398 416 - -
Vium1246g00005 427 MobiDBLite consensus disorder prediction 398 427 - -
Vium1246g00005 427 MobiDBLite consensus disorder prediction 271 385 - -
Vium1246g00005 427 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Vium1246g00005 427 ProSiteProfiles IQ motif profile. 73 101 IPR000048 GO:0005515
Vium1246g00005 427 MobiDBLite consensus disorder prediction 248 385 - -
Vium1246g00005 427 ProSiteProfiles IQ motif profile. 97 124 IPR000048 GO:0005515
Vium1246g00005 427 Pfam Protein of unknown function (DUF4005) 323 404 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1246g00005 Vium-Chr1246 54018 56827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1246g00005 1 427 IQD Protein Family AT2G26180 58.916 3.98e-142 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1246g00005 - - gmx:100787102 673.315