Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12469g00002 ATGTCTTTCACTGGAACTCTAGACAAATGCAATGCATGCGACAAGACTGTTTATGTGGTTGACCTGTTAACTCTTGAAGGCACTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATGTCTCACGATGAGCACATACTCCTCAATGGATGGAGTTCTATACTGCAAGACACATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCGGCTGAGAAACAAAATGAAATAAACAGAACTCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCGCTAAAACAGTCTATCCTCTTGAAAAGGTAACACTGGAAGGAGAATGCTACCACAAGACTTGTTTCAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTTCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCTTCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCACCAGTAGCATCTGAGGAACCTAAAGTAGTGGAAGATGAAGAAAAAAGTGAAGAAAAAAGTGAAGAAAAAAGTGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAGCTCTTGA 696 0.4353 MSFTGTLDKCNACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFAKSAEKQNEINRTPSKLSSMFSGTLDKCAVCAKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPPVASEEPKVVEDEEKSEEKSEEKSEEKEEEEEEEESS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12469g00002 231 SMART lim_4 103 155 IPR001781 -
Vium12469g00002 231 SMART lim_4 9 61 IPR001781 -
Vium12469g00002 231 MobiDBLite consensus disorder prediction 175 231 - -
Vium12469g00002 231 Coils Coil 203 231 - -
Vium12469g00002 231 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vium12469g00002 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Vium12469g00002 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vium12469g00002 231 PANTHER OS06G0237300 PROTEIN 6 100 - -
Vium12469g00002 231 FunFam LIM domain and actin-binding 1 98 168 - -
Vium12469g00002 231 MobiDBLite consensus disorder prediction 217 231 - -
Vium12469g00002 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Vium12469g00002 231 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Vium12469g00002 231 Gene3D Cysteine Rich Protein 100 168 - -
Vium12469g00002 231 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vium12469g00002 231 FunFam LIM domain and actin-binding 1 4 74 - -
Vium12469g00002 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vium12469g00002 231 Pfam LIM domain 10 65 IPR001781 -
Vium12469g00002 231 Pfam LIM domain 104 159 IPR001781 -
Vium12469g00002 231 MobiDBLite consensus disorder prediction 195 216 - -
Vium12469g00002 231 Gene3D Cysteine Rich Protein 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12469g00002 Vium-Chr12469 4787 6844 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vium12469g00002 LIM 5.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12469g00002 - K09377 gmx:100800234 379.793