Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12469g00001 ATGTCTTTCACTGGAACTCTAGACAAATGCAATGCATGCGACAAGACTGTTTATGTGGTTGACCTGTTAACTCTTGAAGGCACTCCTTACCATAAGAACTGCTTCAAATGCAGTCACTGCAAGGGATGTCTCACGATGAGCACATACTCCTCAATGGATGGAGTTCTATACTGCAAGACACATTTTGAACAACTCTTCAAGGAATCTGGCAATTTCAGCAAGAACTTCGCAAAGTCGGCTGAGAAACAAAATGAAATACAGAACAGAACTCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTATGCGCTAAAACAGTCTATCCTCTTGAAAAGGTAACACTGGAAGGAGAATGCTACCACAAGACTTGTTTCAGGTGTGCTCATGCAGGGTGCCCTCTGACACATTCAAGCTATGCTGCCCTTGATGGTGTCCTCTACTGCAGAGTCCACTTTCAACAACTGTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACTGGTTCTTCTACACCTCCTGAGCCTCTATTTGAGGAGCCATCACATCCACCAGTAGCATCTGAGGAACCTAAAGTAGTGGAAGATGAAGAAAAAAGTGAAGAAAAAAGTGAAGAAAAAAGTGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAGCTCTTGA 699 0.4363 MSFTGTLDKCNACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGCLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFAKSAEKQNEIQNRTPSKLSSMFSGTLDKCAVCAKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPPVASEEPKVVEDEEKSEEKSEEKSEEKEEEEEEEESS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12469g00001 232 SMART lim_4 104 156 IPR001781 -
Vium12469g00001 232 SMART lim_4 9 61 IPR001781 -
Vium12469g00001 232 MobiDBLite consensus disorder prediction 218 232 - -
Vium12469g00001 232 Pfam LIM domain 10 65 IPR001781 -
Vium12469g00001 232 Pfam LIM domain 105 160 IPR001781 -
Vium12469g00001 232 PANTHER OS06G0237300 PROTEIN 6 102 - -
Vium12469g00001 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Vium12469g00001 232 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vium12469g00001 232 Gene3D Cysteine Rich Protein 5 72 - -
Vium12469g00001 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 170 - -
Vium12469g00001 232 Coils Coil 204 232 - -
Vium12469g00001 232 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Vium12469g00001 232 FunFam LIM domain and actin-binding 1 4 74 - -
Vium12469g00001 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vium12469g00001 232 MobiDBLite consensus disorder prediction 196 217 - -
Vium12469g00001 232 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vium12469g00001 232 FunFam LIM domain and actin-binding 1 99 169 - -
Vium12469g00001 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vium12469g00001 232 Gene3D Cysteine Rich Protein 101 169 - -
Vium12469g00001 232 MobiDBLite consensus disorder prediction 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12469g00001 Vium-Chr12469 4787 6845 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vium12469g00001 LIM 5.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12469g00001 - K09377 gmx:100800234 375.17