Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1244g00005 ATGGAATTGCATAGATATTGCCGTATGGCTTTTGTGCAATGGAGTTTCCTGGCTTGGTTTGTTTTCTTTTCTGTGGGACTTGAGACCCTAGCCAATTCTTGTGACCAGCATGATTTGTTGGGCCTGAAGGAATTTGCAGGCAATCTTACAAAAGGGTCTATCATCACAGCATGGTCAGATGGTGTTTTCTGCTGCAAATGGGTTGGAGTTGTTTGTGAAGATGTGGTTGATGGAGGTAGTAGAGTGTCCAAGTTGATTCTACCTGGAATGGGTCTTAACGGCACAATTTCAAGTTCTTTAGCTTCTCTGGATCAGCTGAAAGTGCTTGATATTTCGTTCAATCGTCTCCAAGGTGGATTGCCTTCCGAGTTCTCTAATTTGAAGCAGTTAGAAGTTCTTGATTTGAGCCATAATATTCTGTCTGGACCACTTGTTGGGGTACTCTCTGGTTTGCAATCCCTTCAGATACTGAATATTTCTAGCAATTTATTTGTTGGAGACCTCTTCCAATTTGGGGGATTACAACATCTCGTTGCTCTCAACATAAGCAACAATTCATTCACTGGCCAGTTCAATTCTCAAATTTGCAGCTTCTCCAAGGGTATTCATATTCTTGATATATCACAAAATAATTTTTCTGGTGGTCTTGAATGGTTGGCAAACTGCAGCACATCTGTCCAAGAGTTACATTTGGATTCCAATTTTTTTACTGGCTATCTTCCTGATTCCTTGTATTCAATTTCAGCATTGGAGCAGCTCTCAGTCTCTATGAACAACCTCTCCGGTCAGTTAAGCGTGAAGCTAAGTTATCTCTCAAACCTAAAATCTTTAATAATTTCTGGAAATCGGTTTTCTGGGGAGCTCCCTAATGTTTTTGGGAATCTTTCGGACCTTGAACAGCTAATAGCGCACTCCAATTCATTTTCTGGATCATTACCTTCCACCTTGGCCTTATGCTCAAAACTTCAAGTTCTTGATCTTCGGAATAATTCTTTGACAGGTTCTGTTGGCCTTAATTTCACTGGGTTGTCTAATCTTTCCACGTTGGACCTTGGTAGCAATCATTTTAATGGACCCCTTCCAAATTCTTTGTTCAATTGCCATGAATTGACAATGTTAAGCCTTGCAAAAAATGAATTAACAGGCCAAATCCCTGAGAGTTATGCGAACCTCACTTCACTTTTGACTATGTCTCTGTCAAACAACAGCTTTGAGAACCTAGCTGGGGCGCTTTATGTACTGCAGCACTGCAAAAATCTCACAACTCTTATCCTCACAAAGAATTTCCGTGGTGAAGAAATTTCAGAAAATTTAACGGTAAGCTTCAAGAGCCTTGTGGTGTTAGCACTTGGAAATTGTGGTCTCAAAGGCCGTATTCCTGTTTGGCTGTTAAATTGCTCGAAATTGGAAGTTCTCGATTTTTCATGGAACCATTTGGAAGGCAGTGTCCCTTCTTGGATTGGTTGGATGGATCATCTGTTCTACTTGGATTTGTCAAATAATTCTCTTACTGGAGAAATACCAAAAGGTTTGACAGAGCTGAAGGGCCTCATATCCCTAAATTATCATATATCAAGTCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGTTGCAATATAACCATGCTTCGAGTTTCCCTCCATCAATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCCTGAAATAGGTCGTTTGAGAGAACTTCATATCTTAGATTTAAGCAGGAACAACATCACCGGCACAATTCCCAGCTCTATCTCTGAGATGAAGAATTTGGAAACACTAGACTTATCTAATAATAATCTATACGGAACTATTCCTCCATCATTTAACAACCTCACATTCTTGTCTAAGTTCAGTGTGGCATATAATCACTTGTGGGGAACAATTCCAGCTGGGGGACAATTTTCAAGTTTCCCAAATTCAAGTTTTGAGGGCAACCTGGGTCTGTGTGGGGAAACATACAATCATTGTAACAATGAAAAAAATGTCGACATTTCCACTCCTTCCTCGGGTAAATTCTGTAAAAGCAGTGTCCTTGGCATCACAATTGGTTGTGGAGTGGGCCTTGCACTACTTATTGCAGTTATTCTGCTAAGAATGTCAAAGAAGGATGAGGATAAACCAGTGGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGGGTACCTGAAGCAGTTGTTTCTTCAAAATTGGTTCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGAAGATTTGATAAAATCTACCAACAACTTTAACCAAGAAAACATAATTGGTTGTGGTGGGTTTGGCCTTGTCTACAAGGCAAATCTTCAAAATGGCAGAAAGGTAGCTGTGAAGAAACTTTCGGGATACTGTGGTCAGGTGGAACGAGAATTCCAAGCAGAAGTGGAGGCACTCTCTAGAGCTCAACATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATCTTAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGTCTTGACTATTGGTTGCATGAGAGTGAGGATGGAAATTCAGCTCTAAAATGGAATGTAAGACTCAAGATAGCTCAAGGTGCAGCTCATGGACTAGCTTATTTGCACAAGGAGTGTGAACCACATATTGTGCACAGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTCGAAGCTTATTTGGCTGATTTTGGTCTTTCAAGGCTACTTCAACCCTATGATACACATGTTTCAACAGATTTAGTTGGAACTTTAGGATATATTCCTCCAGAATATAGTCAAGCACTGAAAGCAACATTCAAAGGTGATATTTATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTCACTGGTCGAAGGCCTGTAGAAGTCATTGTGGGGCAATGCAGCAGGAATCTAGTGTCTTGGGTGTTTCAGATGAAATCTGAAAATAGGGATCAAGAAATTTTTGATTCAGTCATTTGGCATAAGGATATTGAGAAACAGCTCTTAGAGGTACTAGCTATTGCTTGTAAATGTATAGATGCAGATCCAAGGCAGAGACCCCATATTGAATTAGTTGTTTCATGGCTTGATGGTGTAGGATTTGATGGCTCTGAATAG 3141 0.3986 MELHRYCRMAFVQWSFLAWFVFFSVGLETLANSCDQHDLLGLKEFAGNLTKGSIITAWSDGVFCCKWVGVVCEDVVDGGSRVSKLILPGMGLNGTISSSLASLDQLKVLDISFNRLQGGLPSEFSNLKQLEVLDLSHNILSGPLVGVLSGLQSLQILNISSNLFVGDLFQFGGLQHLVALNISNNSFTGQFNSQICSFSKGIHILDISQNNFSGGLEWLANCSTSVQELHLDSNFFTGYLPDSLYSISALEQLSVSMNNLSGQLSVKLSYLSNLKSLIISGNRFSGELPNVFGNLSDLEQLIAHSNSFSGSLPSTLALCSKLQVLDLRNNSLTGSVGLNFTGLSNLSTLDLGSNHFNGPLPNSLFNCHELTMLSLAKNELTGQIPESYANLTSLLTMSLSNNSFENLAGALYVLQHCKNLTTLILTKNFRGEEISENLTVSFKSLVVLALGNCGLKGRIPVWLLNCSKLEVLDFSWNHLEGSVPSWIGWMDHLFYLDLSNNSLTGEIPKGLTELKGLISLNYHISSLFASAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLSGTIWPEIGRLRELHILDLSRNNITGTIPSSISEMKNLETLDLSNNNLYGTIPPSFNNLTFLSKFSVAYNHLWGTIPAGGQFSSFPNSSFEGNLGLCGETYNHCNNEKNVDISTPSSGKFCKSSVLGITIGCGVGLALLIAVILLRMSKKDEDKPVDNFDEELSWPNRVPEAVVSSKLVLFQNSDCKDLTVEDLIKSTNNFNQENIIGCGGFGLVYKANLQNGRKVAVKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHLNDRLLIYSYLENGSLDYWLHESEDGNSALKWNVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTGRRPVEVIVGQCSRNLVSWVFQMKSENRDQEIFDSVIWHKDIEKQLLEVLAIACKCIDADPRQRPHIELVVSWLDGVGFDGSE 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1244g00005 1046 PANTHER LEUCINE RICH REPEAT KINASE 2 271 1037 - -
Vium1244g00005 1046 ProSiteProfiles Leucine-rich repeat profile. 602 624 IPR001611 GO:0005515
Vium1244g00005 1046 CDD STKc_IRAK 772 1039 - -
Vium1244g00005 1046 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 67 301 - -
Vium1244g00005 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Vium1244g00005 1046 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 732 841 - -
Vium1244g00005 1046 FunFam Leucine-rich repeat receptor-like protein kinase 842 1045 - -
Vium1244g00005 1046 Pfam Protein kinase domain 767 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1244g00005 1046 ProSiteProfiles Protein kinase domain profile. 766 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1244g00005 1046 Pfam Leucine Rich Repeat 273 295 IPR001611 GO:0005515
Vium1244g00005 1046 SMART serkin_6 766 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1244g00005 1046 PRINTS Leucine-rich repeat signature 600 613 - -
Vium1244g00005 1046 PRINTS Leucine-rich repeat signature 493 506 - -
Vium1244g00005 1046 SMART LRR_typ_2 490 514 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 127 150 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 271 294 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 343 367 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 391 414 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 600 623 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 103 126 IPR003591 -
Vium1244g00005 1046 SMART LRR_typ_2 576 599 IPR003591 -
Vium1244g00005 1046 Gene3D Ribonuclease Inhibitor 170 388 IPR032675 -
Vium1244g00005 1046 Gene3D Ribonuclease Inhibitor 406 677 IPR032675 -
Vium1244g00005 1046 SUPERFAMILY L domain-like 234 642 - -
Vium1244g00005 1046 Gene3D Ribonuclease Inhibitor 35 169 IPR032675 -
Vium1244g00005 1046 ProSitePatterns Protein kinases ATP-binding region signature. 772 795 IPR017441 GO:0005524
Vium1244g00005 1046 FunFam Tyrosine-sulfated glycopeptide receptor 1 340 674 - -
Vium1244g00005 1046 SUPERFAMILY Protein kinase-like (PK-like) 748 1037 IPR011009 -
Vium1244g00005 1046 Gene3D Transferase(Phosphotransferase) domain 1 842 1041 - -
Vium1244g00005 1046 Gene3D Phosphorylase Kinase; domain 1 732 841 - -
Vium1244g00005 1046 SUPERFAMILY L domain-like 56 301 - -
Vium1244g00005 1046 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Vium1244g00005 1046 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Vium1244g00005 1046 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Vium1244g00005 1046 SMART LRR_sd22_2 319 348 - -
Vium1244g00005 1046 SMART LRR_sd22_2 490 513 - -
Vium1244g00005 1046 SMART LRR_sd22_2 576 599 - -
Vium1244g00005 1046 SMART LRR_sd22_2 103 129 - -
Vium1244g00005 1046 SMART LRR_sd22_2 367 393 - -
Vium1244g00005 1046 SMART LRR_sd22_2 600 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1244g00005 Vium-Chr1244 45318 49380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1244g00005 58 1046 Receptor kinase-like Gene Family AT1G55610 34.577 2.39e-163 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium1244g00005 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1244g00005 - - gmx:100789534 1761.12