Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12448g00001 ATAGGTATTTTCTCAATTGTTTCAGAGAATTTGGTTGGCAAAGGTGGTTGTAGTTATGTTTACCGAGGATGTCTTCCAGATGGCAAGGAATTGGCCGTGAAAATTTTGAAGCCGTCTGAAAACGTGGTAAAGGAGTTTGTTCAGGAAATTGAGATCATTACGACTTTGTGCCACAAGAGCATAATATCTGTATCTGGCTTTTGTTTAGAGGGCAACCATTTGCTACTAGTATATGATTTTTTGTCAAGGGGAAGCCTAGAAGAAAACCTCCATGGCAACAAGGCTGACTGTAGTGCATTTGGTTGGCAAGAAAGGTACAAGGTGGCTGTGGGTGTAGCTGAGGCACTGGACTATCTGCATAATGGCTGTGCTCAGGCTGTTATCCATAGGGATGTGAAATCTTCTAATATCCTTCTTTCAGATGATTTTGAGCCTAAGCTTTCAGATTTTGGACTGGCTAGTTGGGGTTCATCTTCTTCCCAAGTTACTTGTACCGATGTAGCTGGAACTTTTGGATACCTCGCACCTGAGTATTTTATGCACGGTAAAGTGACTGATAAAATTGATGTATATGCTTTTGGTGTTGTACTCCTTGAGCTTCTCTCAAATAGGAAGCCCATTAACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACACCAATATTGAAAGGTGGGAAGTTTCCTCAGTTGTTTGATCCAAACCTAGGCATTGAATACGATGATGGCCAGATGAAGAGAATGGTTTTGGCCGCTAGTCTCTGCATTAGACGGGAACCTAGACTGCGGCCTCAAATCGACCTGATATTGAAACTTCTTCGTGGTGATGAAGAGGTCACAAGATGGGCAGAACAAGAAGTTAATTCACCGCAGGAACTTGATGGTTTTGAGGAGGAACCAATTCCAACTAACATACAGTCCCACCTGAACCTTGCTTTGATGGATTTGGAGGATGATACGGTTTCTATAAGTAGCACTGAGCAGAGTGTCTCTTTGGAGGACTATTTGCAGGGAAGATGGAGTCGCTGTTCAAGTTTTGACTGA 1053 0.4302 IGIFSIVSENLVGKGGCSYVYRGCLPDGKELAVKILKPSENVVKEFVQEIEIITTLCHKSIISVSGFCLEGNHLLLVYDFLSRGSLEENLHGNKADCSAFGWQERYKVAVGVAEALDYLHNGCAQAVIHRDVKSSNILLSDDFEPKLSDFGLASWGSSSSQVTCTDVAGTFGYLAPEYFMHGKVTDKIDVYAFGVVLLELLSNRKPINNECPKGQESLVMWATPILKGGKFPQLFDPNLGIEYDDGQMKRMVLAASLCIRREPRLRPQIDLILKLLRGDEEVTRWAEQEVNSPQELDGFEEEPIPTNIQSHLNLALMDLEDDTVSISSTEQSVSLEDYLQGRWSRCSSFD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12448g00001 350 Gene3D Phosphorylase Kinase; domain 1 4 80 - -
Vium12448g00001 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vium12448g00001 350 SMART serkin_6 6 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12448g00001 350 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 4 80 - -
Vium12448g00001 350 Gene3D Transferase(Phosphotransferase) domain 1 81 297 - -
Vium12448g00001 350 PANTHER OS08G0249100 PROTEIN 8 303 IPR046958 -
Vium12448g00001 350 SUPERFAMILY Protein kinase-like (PK-like) 9 284 IPR011009 -
Vium12448g00001 350 ProSiteProfiles Protein kinase domain profile. 6 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12448g00001 350 FunFam Putative receptor-like serine/threonine-protein kinase 81 292 - -
Vium12448g00001 350 Pfam Protein kinase domain 9 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12448g00001 Vium-Chr12448 4 1994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12448g00001 9 277 Trihelix Transcription Factor Family AT1G68690 44.286 3.68e-73 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium12448g00001 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12448g00001 - - vum:124821393 709.138