Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12447g00002 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGTGTCTCTATTGGAGTGGCCCTTGGGATTTTGATAGCTTGCTTGGTGTATTTTTGCACAAGGTGGTACAATAAGCGAACTCATCTTAACCGATCTGCGAATGAGCCTAGTTTAACAGCTATCCCTATACGAACAAATGGATTAGGAACGAGCACTGACTTCAGTGCATCACTCACCAGTTCCATAGCCACTTATAGGTCACCAAATCCTCCAAAAAAATCACATCCAGCTGGGCGGAATCATCAGAATAAAGATGGCTTTGCTTCTGTATCAGGCATTCTGAAGTACTCGTACAAGGAAATTCAGAAGGCCACACAAAATTTCACAAATATTTTGGGAGAAGGGTCATTTGGCACAGTTTATAAAGCCGTGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATACGATGAAGAAAAAGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCGCACGGAATAGAATACCTTCATGAAGGGGCAGTACCACATGTCGTACATCGAGATCTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTCGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCATACATTACCTCGAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCATCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTACGATGGTGTAGATGGGATACTTGACAAGCAACTTGTGGGAAAATGCAACGTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGCCCATCTATAAGTGAAGTTTCGCAGGCTATATTGGGGATTAAGCAAAGGCAAAGGCGTCTGATGAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGAAGCATGAGTCAAATAGATGAGCAACAGGTTGAATTAAGTACAGGGAAATAG 1251 0.4149 MVDQGDLVVICVSIGVALGILIACLVYFCTRWYNKRTHLNRSANEPSLTAIPIRTNGLGTSTDFSASLTSSIATYRSPNPPKKSHPAGRNHQNKDGFASVSGILKYSYKEIQKATQNFTNILGEGSFGTVYKAVMPTGEVVAVKMLAPNSKQGEKEFLTEVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYDEEKELSWDERLQIAVDISHGIEYLHEGAVPHVVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYITSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCNVEEVRQLAKIAHKCLHKSPRKRPSISEVSQAILGIKQRQRRLMKEDTMSFASTNFSRSMSQIDEQQVELSTGK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12447g00002 416 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12447g00002 416 Gene3D Phosphorylase Kinase; domain 1 83 191 - -
Vium12447g00002 416 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Vium12447g00002 416 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 388 - -
Vium12447g00002 416 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vium12447g00002 416 SMART serkin_6 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12447g00002 416 SUPERFAMILY Protein kinase-like (PK-like) 95 373 IPR011009 -
Vium12447g00002 416 Gene3D Transferase(Phosphotransferase) domain 1 192 402 - -
Vium12447g00002 416 MobiDBLite consensus disorder prediction 75 95 - -
Vium12447g00002 416 CDD STKc_IRAK 122 373 - -
Vium12447g00002 416 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 401 - -
Vium12447g00002 416 FunFam serine/threonine-protein kinase PBS1-like 86 191 - -
Vium12447g00002 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12447g00002 Vium-Chr12447 14210 21016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12447g00002 111 375 Receptor kinase-like Gene Family AT1G67720 44.765 1.89e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vium12447g00002 PK_Tyr_Ser-Thr 2.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12447g00002 - - gmx:100794239 724.931