Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12439g00003 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCTACCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGACTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATCTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGTTTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAAGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAAGTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTATCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTTCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCCGTTCAAAAGCCTGGGGAGTTTATAATAACTTTCCCTAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCGGATTTTCCCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATGTTGATTGCAACTGTCATATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAGCAAACCAATAGTGGTCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCATTGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCCCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACAAATATCAATTTAGGAGGAGGTATTGTTGATTTTGAGGATTTTGGTGAAAGAATACCCAACAGTGCATGTGAATCTTCGTTATCCCCTGCTGTGTGCCATGAAAGCTCGATTAAACCACAGAGTGTTGTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGGCTGAAGAAAGTCCTTCCTGAAGGAAGGAGTGATCAACCAATGGATTTCAGAACTCAGGAGTTAAGTTACAAACATGTTAGCCATAAAAGTCGTGTTCAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCGATAAGATATAAGAAGTTAGGAAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAAAGATAGGTTCTTGCAGCAACAGACATTTAGGGAACCGCCTTCCATTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA 2565 0.4133 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMESVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVSSHSHGTILCSLCKRDCYVAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLYLREDIMDMEAAAKMFEQEDGISHEIRKQTNSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNNQEYSTQNQSVFVHCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGGIVDFEDFGERIPNSACESSLSPAVCHESSIKPQSVVQRVDTKPIADESDSDSEMFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMDFRTQELSYKHVSHKSRVQVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRKDRFLQQQTFREPPSIEIEPKRLKVRGPSFLGLESRLN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12439g00003 854 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Vium12439g00003 854 MobiDBLite consensus disorder prediction 742 759 - -
Vium12439g00003 854 FunFam Lysine-specific demethylase isoform A 83 432 - -
Vium12439g00003 854 Pfam jmjN domain 89 121 IPR003349 -
Vium12439g00003 854 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Vium12439g00003 854 MobiDBLite consensus disorder prediction 727 759 - -
Vium12439g00003 854 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Vium12439g00003 854 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 810 - -
Vium12439g00003 854 SMART cupin_9 232 405 IPR003347 -
Vium12439g00003 854 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Vium12439g00003 854 SMART JmjN_1 87 128 IPR003349 -
Vium12439g00003 854 Gene3D Cupin 88 445 - -
Vium12439g00003 854 SUPERFAMILY Clavaminate synthase-like 166 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12439g00003 Vium-Chr12439 6612 12815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12439g00003 85 544 JUMONJI Transcription Factor Family AT2G34880 32.653 6.78e-62 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium12439g00003 JmjC 1.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12439g00003 - - gmx:100798611 1491.48