Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12439g00002 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCTACCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGACTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATCTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGTTTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAAGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAAGTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTATCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTTCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCCGTTCAAAAGCCTGGGGAGTTTATAATAACTTTCCCTAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCGGATTTTCCCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATGTTGATTGCAACTGTCATATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAGCAAACCAATAGTGGTCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCATTGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCCCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACAAATATCAATTTAGGAGGAGGTATTGTTGATTTTGAGGATTTTGGTGAAAGAATACCCAACAGTGCATGTGAATCTTCGTTATCCCCTGCTGTGTGCCATGAAAGCTCGATTAAACCACAGAGTGTTGTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGGCTGAAGAAAGTCCTTCCTGAAGGAAGGAGTGATCAACCAATGAAATTACATTCTTTGTGCAGGCCAACATTTGGAATCTGCACGGGTGGTGATCCTTTGGGTTCTCACGCCGAGGTGTTTTTCCAACTTTGGTTGGTGAACCTGACTTGCAAAGTTAGGACTTAG 2403 0.4132 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMESVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVSSHSHGTILCSLCKRDCYVAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLYLREDIMDMEAAAKMFEQEDGISHEIRKQTNSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNNQEYSTQNQSVFVHCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGGIVDFEDFGERIPNSACESSLSPAVCHESSIKPQSVVQRVDTKPIADESDSDSEMFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMKLHSLCRPTFGICTGGDPLGSHAEVFFQLWLVNLTCKVRT 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12439g00002 800 Gene3D Cupin 88 445 - -
Vium12439g00002 800 SMART cupin_9 232 405 IPR003347 -
Vium12439g00002 800 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Vium12439g00002 800 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 742 - -
Vium12439g00002 800 FunFam Lysine-specific demethylase isoform A 83 432 - -
Vium12439g00002 800 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Vium12439g00002 800 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Vium12439g00002 800 SMART JmjN_1 87 128 IPR003349 -
Vium12439g00002 800 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Vium12439g00002 800 Pfam jmjN domain 89 121 IPR003349 -
Vium12439g00002 800 SUPERFAMILY Clavaminate synthase-like 166 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12439g00002 Vium-Chr12439 6502 12815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12439g00002 85 544 JUMONJI Transcription Factor Family AT2G34880 32.653 6.76e-62 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium12439g00002 JmjC 1.7e-39 CL0029