Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12439g00001 ATTCCAATATACTGCGACTCTTNCGTTCAAAAGCCTGGGGAGTTTATAATAACTTTCCCTAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCGGATTTTCCCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATGTTGATTGCAACTGTCATATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAGCAAACCAATAGTGGTCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCATTGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCCCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACAAATATCAATTTAGGAGGAGGTATTGTTGATTTTGAGGATTTTGGTGAAAGAATACCCAACAGTGCATGTGAATCTTCGTTATCCCCTGCTGTGTGCCATGAAAGCTCGATTAAACCACAGAGTGTTGTTCAGAGAGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGGCTGAAGAAAGTCCTTCCTGAAGGAAGGAGTGATCAACCAATGGATTTCAGAACTCAGGAGTTAAGTTACAAACATGTTAGCCATAAAAGTCGTGTTCAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCGATAAGATATAAGAAGTTAGGAAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAAAGATAGGTTCTTGCAGCAACAGACATTTAGGGAACCGCCTTCCATTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA 1518 0.4177 IPIYCDSXVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVSSHSHGTILCSLCKRDCYVAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLYLREDIMDMEAAAKMFEQEDGISHEIRKQTNSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNNQEYSTQNQSVFVHCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGGIVDFEDFGERIPNSACESSLSPAVCHESSIKPQSVVQRVDTKPIADESDSDSEMFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMDFRTQELSYKHVSHKSRVQVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRKDRFLQQQTFREPPSIEIEPKRLKVRGPSFLGLESRLN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12439g00001 505 Pfam JmjC domain, hydroxylase 5 39 IPR003347 -
Vium12439g00001 505 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 461 - -
Vium12439g00001 505 Gene3D Cupin 2 97 - -
Vium12439g00001 505 ProSiteProfiles JmjC domain profile. 1 56 IPR003347 -
Vium12439g00001 505 Pfam C5HC2 zinc finger 136 187 IPR004198 -
Vium12439g00001 505 MobiDBLite consensus disorder prediction 378 410 - -
Vium12439g00001 505 SUPERFAMILY Clavaminate synthase-like 8 72 - -
Vium12439g00001 505 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12439g00001 Vium-Chr12439 2823 5503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12439g00001 3 70 C2H2 Transcription Factor Family AT5G04240 54.412 1.53e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium12439g00001 zf-C5HC2 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12439g00001 - - vum:124821386 1007.67