Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12430g00007 ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCTGAACCCGCCAAACCCATCGAGCCACAGCAACAAGACCAAGAACCAGAGGAACAACTCGACCAGCAAGAGCAACCCAATCCCGAACCAACCTTAGAAGAGCCCAACACCATGGCCGTCGACGAACCAACAGAGGAACAGCAGCAAGAACAGCAAATCGCCGAAGGTCAAGAAGAGGAAGAGGAATTAGAGGAGCAACAGGAGCAGGAGCCAGAAACCCTAGAAGAGCAACAGGAGCCGGAAGCTCTAGAAGCTGCGAACCACGCCGAAGCAAACGGTGCTGGAGAAGAAGAGAACAACGAAGAGGAAGATGAGGATCTCAGTCTTGAAGACGAGCCCGTGGAGAAACTTCTCGAACCATTCACGAAGGAGCAGCTGCATGCTCTTGTGAAGCAGGCCGTGGAGAGGTTCCCTGAATTTGTCGAGAGCGTACGCCAGCTCGCCGATGTGGACCCCGCACACCGGAAGATCTTCGTCCACGGCCTCGGCTGGGACGCCACTGCCGAAACCCTAACTTCCGTGTTTGGGAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAAGTCTCTGGCAAATCGAAGGGTTACGCTTTCATCCTTTTCAAGCACAGGGATGATGCTCGCAAGGCGCTGAAAAATCCCCAGAAGAAAATTGGAAACCGTACCACTTCTTGTCAGCTGGCCTCTGCTGGCCCTGTTCCGGCGCCCCCGCCGAACGCCAATCCGGTTTCTGAGTATACGCAGCGGAAGATATTTGTGAGCAACGTGAGTGCTGAGATTGATCCCCCAAAACTGCTTGATTTCTTCAAGCAATTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTGGACAAGAACACCGGGAAACCTAAGGGTTTCGCTCTGTTTGTTTATAGGTCTGTGGAAAGTGCTAAAAAGGCTTTGGAAGAACCTCATAAGAACTTTGAAGGCCATACTTTGTATTGTCAGAAGGCTGTCGATGGTCCCAAGGGGAACAAAGGGTATCATCAGTATCACCATCAGCAGCATTCCCATCATCATCACCATCACCATCATCAGCCTCATTATCAGAGAAAGGAGAAGAACAAGTATTCCTCTGGGGGAGGTGGTCCGTCCCATGGCAGTGGTCATTTGATGGCCCCCTCGGCGTCTGCTGTGGGGGGTTTCAACCCGGGCGTGCCGGCTCAAGGGTTGAATCCTGCTCTTGGACAGGCGCTAACGGCTTTGCTCACTAACCAGGGAGCTGGATTAGGTCTTGGAAATCTGCTTGGAGGACTTGGTGGTGCCCCCGTTAACCAGGCGGGGCCACCTGCCCCGTATGGGAATCAGCCTGCTATGGGATATGGGAACCAGCCAGCAATGCAACAGGGATACCAGAATCCTCAAATGGGTCAGAGCAGTGCTGTCAGACCCCACCCTGGTGCGGGCGCTCCTTACATGGGTCATTAG 1485 0.538 MAKKRKLRSSDPEPAKPIEPQQQDQEPEEQLDQQEQPNPEPTLEEPNTMAVDEPTEEQQQEQQIAEGQEEEEELEEQQEQEPETLEEQQEPEALEAANHAEANGAGEEENNEEEDEDLSLEDEPVEKLLEPFTKEQLHALVKQAVERFPEFVESVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIDPPKLLDFFKQFGEVEDGPLGLDKNTGKPKGFALFVYRSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYGNQPAMGYGNQPAMQQGYQNPQMGQSSAVRPHPGAGAPYMGH 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12430g00007 494 Coils Coil 57 87 - -
Vium12430g00007 494 MobiDBLite consensus disorder prediction 348 370 - -
Vium12430g00007 494 Gene3D - 250 388 IPR012677 -
Vium12430g00007 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 48 342 - -
Vium12430g00007 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 340 IPR000504 GO:0003723
Vium12430g00007 494 MobiDBLite consensus disorder prediction 471 494 - -
Vium12430g00007 494 MobiDBLite consensus disorder prediction 63 90 - -
Vium12430g00007 494 Gene3D - 157 244 IPR012677 -
Vium12430g00007 494 SMART rrm1_1 167 239 IPR000504 GO:0003723
Vium12430g00007 494 SMART rrm1_1 263 335 IPR000504 GO:0003723
Vium12430g00007 494 SUPERFAMILY RNA-binding domain, RBD 246 360 IPR035979 GO:0003676
Vium12430g00007 494 MobiDBLite consensus disorder prediction 107 121 - -
Vium12430g00007 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 332 IPR000504 GO:0003723
Vium12430g00007 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Vium12430g00007 494 MobiDBLite consensus disorder prediction 1 121 - -
Vium12430g00007 494 MobiDBLite consensus disorder prediction 342 395 - -
Vium12430g00007 494 SUPERFAMILY RNA-binding domain, RBD 154 247 IPR035979 GO:0003676
Vium12430g00007 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12430g00007 Vium-Chr12430 40238 42576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12430g00007 258 341 C2H2 Transcription Factor Family AT2G19380 28.571 9.87e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12430g00007 K12741 - gmx:100783742 664.455