Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12430g00001 ATGTCTTCGTTTGGGACAAATGGCACTGAGGATTCCCTGCCTCCGCCACCACCTGCTATCCCATCAGATGTAGTGCCTATCAAAATGGAGCCGGAGAAAAAGAAGGTCCTGAGGCTTCCAATAGCCAGGCGTGGCCTTGCTTCTAAAGGGATGAAGTTGCGACTTCTCACTAATCACTTCAGAGTAAATGTTGGAAACACTGACGGTCACTTTTTTCAGTATAGTGTATCTCTTTCTTATGAAGATGGACGCCCTGTAGAGGGTAAGGGTGTGGGGAGAAAGGTCCTTGACAGGGTTCAGGAGACATACAATTCTGAATTAAACGGGAAGGATTTTGCCTATGATGGCGAGAAGACACTTTTTACCCTTGGCTCTCTTGCCCGTAATCGTCTTGAGTTTACTGTTGTTCTTGAGGATGTTGTCTCTGCTGGCAGAAATAATGGAAATGCCAGCCCTGATGGACATGGAGAAATCAATGAGAACGACAAGAAGAGAATGAGGCGTCCAAATAGAGCGAAAACTTTTAAAGTTGAGATTAATTTTGCTTCAAAGATTCCACTGCAAGCCATTGTCAATGCTCTCCGTGGACAGGAATCTGATAATTATCAGGAAGCAATAAGAGTTCTTGATATCATTCTGAGGCAGCACGCTGCTAAACAAGGCTGTTTGCTTGTGCGCCAGTCATTCTTCCATAATGATCCGAAGAATTTTGCTGATGTAGGAGGAGGTGTTCTTGGCTGTCGGGGATTCCATTCTAGTTTTAGAACCACCCAGAGTGGCTTGTCACTTAACATAGATGTCTCAACCACAATGATAGTTACCCCTGGGCCTGTGGTGGACTTCCTCATTTCCAATCAGAATGTAAAAGATACGTTTTCTCTGGACTGGGTAAAGGCCAAGAGAACACTGAAAAATTTGAGGATTAAAGCAAGTCCATCCAATCAAGAGTATAAAATTACTGGGCTTAGTGACCTCCCGTGCAAAGACCAACTGTTTACATTAAAGAGAAAGGGTGGAGTTGATGGTGATGACACTGAGGAGGTGACCGTGTATGATTATTTTGTTAATCGTCGAAACATTGATCTCCGCTACTCAGGTGATCTACCATGTATTAATGTTGGAAAGCCGAAGCGGCCAACATATATTCCACTTGAGCTTTGCTCTTTGGTATCCCTTCAACGGTATACCAAAGCTCTAACCACACTCCAAAGATCCTCATTGGTGGAGAAATCTAGGCAGAAGCCTCCAGAGAGGATGAGAGTGTTGACAGATGCTTTGAGTCGAAGCAATTATGGTTCTGAACCTATGCTTCGTAATTGTGGTATTTCTATCAACTCTGGCTTTACTGAAGTTGAAGGTCGTGTTTTACAAGCTCCAAGGTTAAAGTTTGGAAATGGGGAGGATTTCAATCCAAGAAATGGGAGGTGGAACTTCAATCAAAAGAAATTAGTTAGGCCTGTAAAAATTGAAAAATGGGCTGTCGTTAACTTTTCTGCCCGATGTGATGTACGGGGACTTGTTAGGGATCTCATCAAGTGCGGTCAAATGAAAGGAATTGCTATTGAACAACCTTTTGACGTCTTTGAAGAAGATTTTCGCAATAAACGATCCCCACCTTTGGTTAGAGTCGAGAAAATGCTTGAGTTTGTACAATCTAAACTTCCAGGGCCTCCACAATTTCTTCTTTGTCTACTTCCTGATAGGAAAAATTCTGAACTATATGGTCCATGGAAGAAGAGGAATCTTGCTGATTTTGGGATTGTTACACAGTGTATAGCGCCTCAAAGGGTCAATGATCAATATTTGACCAATGTTTTGCTGAAAATCAATGCCAAGCTTGGTGGCTTGAATTCTATTTTAGGAGCTGAACATGCTCCTTCTATCCCAGTTGTTTCCAGAGCTCCTACCATCATTATTGGCATGGACGTGTCTCATGGCTCCCCAGGGCAAACTGATATTCCTTCTATTGCAGCGGTGGTTAGCTCTCTGGAGTGGCCTCTAATATCAAAGTATAGAGCATGTGTCCGAACCCAGTCTCCGAAGGTTGAAATGATTGACAATTTGTTTAAGAAAGTCTCCGATGGGGTGGACGAAGGCATAATTAGGGAGTTACTTCTTGACTTCTACAGAAGTTCTGGGAATAAAAAGCCTCAGAATATAATCATATTCAGGGATGGAGTCAGTGAGTCCCAGTTCAATCAAGTTTTAAACATCGAGCTCGATCAAATTATAGAGGCTTGCAAGTTTTTAGATGAGAAGTGGAATCCCAAGTTTTTGGTTATTGTGGCTCAAAAGAACCACCATACTAAATTCTTTCAAGCAGATGCTCCCGACAATGTTCCTCCTGGAACTGTGATTGATAACAAAATTTGTCATCCTCGGAATTATGACTTTTACATGTGTGCACATGCTGGAATGATTGGTACTAGTAGGCCTACACATTATCATGTTCTGTTAGATGAGATTGGGTTTTCAGCTGATGATCTGCAGGAACTTGTGCACTCGTTATCATACGTGTATCAGAGGAGCACCACTGCCATATCTGTTGTTGCTCCAATCTGCTATGCTCACTTGGCTGCTACTCAGATGGGGCAGTTTATGAAATTTGAGGAAAGATCGGAGACAGCTTCTAGTCATAGTGGTGCTCACCCTGTCCCTCAGTTGCCTAGATTGAATGATAATGTCTCTAGCTCTATGTTCTTTTGCTGA 2709 0.4267 MSSFGTNGTEDSLPPPPPAIPSDVVPIKMEPEKKKVLRLPIARRGLASKGMKLRLLTNHFRVNVGNTDGHFFQYSVSLSYEDGRPVEGKGVGRKVLDRVQETYNSELNGKDFAYDGEKTLFTLGSLARNRLEFTVVLEDVVSAGRNNGNASPDGHGEINENDKKRMRRPNRAKTFKVEINFASKIPLQAIVNALRGQESDNYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIVTPGPVVDFLISNQNVKDTFSLDWVKAKRTLKNLRIKASPSNQEYKITGLSDLPCKDQLFTLKRKGGVDGDDTEEVTVYDYFVNRRNIDLRYSGDLPCINVGKPKRPTYIPLELCSLVSLQRYTKALTTLQRSSLVEKSRQKPPERMRVLTDALSRSNYGSEPMLRNCGISINSGFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNQKKLVRPVKIEKWAVVNFSARCDVRGLVRDLIKCGQMKGIAIEQPFDVFEEDFRNKRSPPLVRVEKMLEFVQSKLPGPPQFLLCLLPDRKNSELYGPWKKRNLADFGIVTQCIAPQRVNDQYLTNVLLKINAKLGGLNSILGAEHAPSIPVVSRAPTIIIGMDVSHGSPGQTDIPSIAAVVSSLEWPLISKYRACVRTQSPKVEMIDNLFKKVSDGVDEGIIRELLLDFYRSSGNKKPQNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQADAPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEERSETASSHSGAHPVPQLPRLNDNVSSSMFFC 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12430g00001 902 Gene3D paz domain 269 395 - -
Vium12430g00001 902 SMART DUF1785_2 223 275 IPR014811 -
Vium12430g00001 902 SUPERFAMILY Ribonuclease H-like 544 866 IPR012337 -
Vium12430g00001 902 Pfam Argonaute linker 1 domain 225 272 IPR014811 -
Vium12430g00001 902 Gene3D - 455 621 - -
Vium12430g00001 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 47 870 - -
Vium12430g00001 902 Pfam N-terminal domain of argonaute 53 213 IPR032474 -
Vium12430g00001 902 Gene3D - 627 902 IPR036397 GO:0003676
Vium12430g00001 902 ProSiteProfiles PAZ domain profile. 295 391 IPR003100 GO:0005515
Vium12430g00001 902 SMART Piwi_a_2 560 868 IPR003165 GO:0003676
Vium12430g00001 902 MobiDBLite consensus disorder prediction 1 24 - -
Vium12430g00001 902 MobiDBLite consensus disorder prediction 146 166 - -
Vium12430g00001 902 FunFam Protein argonaute 7 270 395 - -
Vium12430g00001 902 Pfam Argonaute linker 2 domain 417 463 IPR032472 -
Vium12430g00001 902 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Vium12430g00001 902 SUPERFAMILY PAZ domain 270 431 IPR036085 GO:0005515
Vium12430g00001 902 ProSiteProfiles Piwi domain profile. 560 868 IPR003165 GO:0003676
Vium12430g00001 902 FunFam Protein argonaute 3 628 902 - -
Vium12430g00001 902 Pfam PAZ domain 279 407 IPR003100 GO:0005515
Vium12430g00001 902 CDD PAZ_argonaute_like 275 390 - -
Vium12430g00001 902 CDD Piwi_ago-like 435 862 IPR045246 -
Vium12430g00001 902 Pfam Mid domain of argonaute 470 523 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12430g00001 Vium-Chr12430 5179 12609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12430g00001 43 902 Eukaryotic Initiation Factors Gene Family AT5G43810 35.463 1.11e-162 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12430g00001 K11593 - gmx:100779439 1603.57