Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1242g00007 ATGGCAAAAAAAACTCGTATTTGTGGATATTCTACGGATAAAATCTGCTACGTGTATTTAGTACCAACGAATAAGAGGTACCTGCGGATAACGGGTAGCAAATATTTTAATATCCGCTTGTTAACGGGTCAAGTTCGGGTATCATACTATCCGTACCCGCAGGTTTTCTTTTCTGTTCAATTTGCTAAAATAGGGCCAAACCCCAAATCCCTTTCTAGGGTTTCTTCTTCAAATGGAGGAATTTACGTTTTTCTCCTCCTCATCTTCATCGTTCCTCTTGCGGCTGCACAATCTACAAACAATAACCAAAACGAATCGTATTACAACCGCTTCAGCCCTTCCATGGTTATCATAATCGTCATCCTCATTGTCGTCGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCATTGCACCCACTTCCCCTTCGCAAGCATCCGCAACCTCACCAAATCCACCTCCCGCCCGCGCCGTGGCCTCGACCAGGCGGTCATGGACACTTTCCCCATGCTGGAGTACTCTGTGGTGAACATCCACAAGCTTGGAAAGGGAACGTTGGAGTGCACGATTTGCTTAAACAAGTTTGAGGACACCGAAACGATGCATTTGATCCACAAGTGCGATCACGTGTTTCACACGGAGTGCATCGACGAGGCGTGCACGACAGTGACAACTGAGTCTACGATGAGGCGGCAGAGGTGGTAG 708 0.4746 MAKKTRICGYSTDKICYVYLVPTNKRYLRITGSKYFNIRLLTGQVRVSYYPYPQVFFSVQFAKIGPNPKSLSRVSSSNGGIYVFLLLIFIVPLAAAQSTNNNQNESYYNRFSPSMVIIIVILIVVVFLMGFFSIYIRHCTHFPFASIRNLTKSTSRPRRGLDQAVMDTFPMLEYSVVNIHKLGKGTLECTICLNKFEDTETMHLIHKCDHVFHTECIDEACTTVTTESTMRRQRW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1242g00007 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 97 219 - -
Vium1242g00007 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 233 IPR013083 -
Vium1242g00007 235 SUPERFAMILY RING/U-box 182 225 - -
Vium1242g00007 235 ProSiteProfiles Zinc finger RING-type profile. 189 219 IPR001841 -
Vium1242g00007 235 Pfam RING-like zinc finger 188 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1242g00007 Vium-Chr1242 35381 36161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1242g00007 83 218 Rapid Response to Elicitors AT3G05200 52.817 1.30e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1242g00007 K10664 - gmx:100783688 201.83