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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vium1242g00007
ATGGCAAAAAAAACTCGTATTTGTGGATATTCTACGGATAAAATCTGCTACGTGTATTTAGTACCAACGAATAAGAGGTACCTGCGGATAACGGGTAGCAAATATTTTAATATCCGCTTGTTAACGGGTCAAGTTCGGGTATCATACTATCCGTACCCGCAGGTTTTCTTTTCTGTTCAATTTGCTAAAATAGGGCCAAACCCCAAATCCCTTTCTAGGGTTTCTTCTTCAAATGGAGGAATTTACGTTTTTCTCCTCCTCATCTTCATCGTTCCTCTTGCGGCTGCACAATCTACAAACAATAACCAAAACGAATCGTATTACAACCGCTTCAGCCCTTCCATGGTTATCATAATCGTCATCCTCATTGTCGTCGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCATTGCACCCACTTCCCCTTCGCAAGCATCCGCAACCTCACCAAATCCACCTCCCGCCCGCGCCGTGGCCTCGACCAGGCGGTCATGGACACTTTCCCCATGCTGGAGTACTCTGTGGTGAACATCCACAAGCTTGGAAAGGGAACGTTGGAGTGCACGATTTGCTTAAACAAGTTTGAGGACACCGAAACGATGCATTTGATCCACAAGTGCGATCACGTGTTTCACACGGAGTGCATCGACGAGGCGTGCACGACAGTGACAACTGAGTCTACGATGAGGCGGCAGAGGTGGTAG
708
0.4746
MAKKTRICGYSTDKICYVYLVPTNKRYLRITGSKYFNIRLLTGQVRVSYYPYPQVFFSVQFAKIGPNPKSLSRVSSSNGGIYVFLLLIFIVPLAAAQSTNNNQNESYYNRFSPSMVIIIVILIVVVFLMGFFSIYIRHCTHFPFASIRNLTKSTSRPRRGLDQAVMDTFPMLEYSVVNIHKLGKGTLECTICLNKFEDTETMHLIHKCDHVFHTECIDEACTTVTTESTMRRQRW
235
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vium1242g00007
235
PANTHER
E3 UBIQUITIN-PROTEIN LIGASE ATL42
97
219
-
-
Vium1242g00007
235
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
147
233
IPR013083
-
Vium1242g00007
235
SUPERFAMILY
RING/U-box
182
225
-
-
Vium1242g00007
235
ProSiteProfiles
Zinc finger RING-type profile.
189
219
IPR001841
-
Vium1242g00007
235
Pfam
RING-like zinc finger
188
217
IPR001841
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vium1242g00007
Vium-Chr1242
35381
36161
Dispersed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vium1242g00007
83
218
Rapid Response to Elicitors
AT3G05200
52.817
1.30e-45
154
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vium1242g00007
K10664
-
gmx:100783688
201.83
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