Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1242g00005 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCGTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGCTGTTAAAAGCATGGAATTTGTGGACTTGGGTTTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAACCTCTAGAGACATCAAGCTATGAACTAAATAGTAATTCTAGTAGAAGAGGGAATTCCTCTACACAAGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAGCGAAGACTCATGATTCTTCCCTGATTGATCTGAAGCTTGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGCAAAAGAAGGGTTTACTTTGACATCCATAAATCCAACTACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACGGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTGGCCGAGTTCGACGATGGCAAGCGCAGTTGCCGCAGGCGCCTAGCTGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCACTCATATCAAGGTACCAAGTATCTTGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTTCAAAGTGGCATCCTTTTCCATGGAAAACATGCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGCCATGCAGCAGGAAATCCATTAGCCGGTTCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCCAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACCGCCTCTAAGGATGTTATCAAGAATCAAACCGCACCATTATCTAATGCAGTTCATGCTCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACCTGTTTGACATCAAACACCGTCTTTCCTCGGAACATGGAGCTACGGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGATGACTACTGTTTCCCAACTGTATGA 1443 0.4262 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREAVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELNSNSSRRGNSSTQVIALDSTMGEEESDSKHLSSLVEAKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSINPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILHSYQGTKYLGSSLQNKPQFPFQNIFQSGILFHGKHAQNSQSGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLAGSRILHGIHIQDRDDLVSQTSLRITSSADKYAANESFPCNTASKDVIKNQTAPLSNAVHALQDHHGDDICQPSDLFDIKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENDDYCFPTV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1242g00005 480 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Vium1242g00005 480 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Vium1242g00005 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 98 373 IPR044817 GO:0003677
Vium1242g00005 480 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
Vium1242g00005 480 Pfam SBP domain 179 252 IPR004333 GO:0003677
Vium1242g00005 480 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1242g00005 Vium-Chr1242 8333 13861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1242g00005 1 478 SBP-box Gene Family AT1G69170 37.247 4.36e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium1242g00005 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1242g00005 - - vum:124825483 959.903