Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1242g00002 ATGCTGTCTCAAAAGCTACAAAAGACCTCAACATGCTTTTGGTTTGGTAGTAGAGGAAGAAATCATGTTGACTCATGCTCTATCTGCTTCAACGATGCCACTGCTCTGAAAAAAGAAAAAATCTCTAAAAAAAAGTTCTTTTTCTTTCTCTCTTTCTCTCTCTCACTGTTCACTCTGCTGTGTGCCAAAACTAAAACCACTCACAAGGTGCCACTAATCTGTCAGGATTCTCCATTATTTCACAGCATCTGTGACTTCGATTTGATTGTACTAATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCGTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGCTGTTAAAAGCATGGAATTTGTGGACTTGGGTTTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAACCTCTAGAGACATCAAGCTATGAACTAAATAGTAATTCTAGTAGAAGAGGGAATTCCTCTACACAAGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAGCGAAGACTCATGATTCTTCCCTGATTGATCTGAAGCTTGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGCAAAAGAAGGGTTTACTTTGACATCCATAAATCCAACTACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACGGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTGGCCGAGTTCGACGATGGCAAGCGCAGTTGCCGCAGGCGCCTAGCTGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCACTCATATCAAGGTACCAAGTATCTTGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTTCAAAGTGGCATCCTTTTCCATGGAAAACATGCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGCCATGCAGCAGGAAATCCATTAGCCGGTTCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCCAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACCGCCTCTAAGGATGTTATCAAGAATCAAACCGCACCATTATCTAATGCAGTTCATGCTCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACCTGTTTGACATCAAACACCGTCTTTCCTCGGAACATGGAGCTACGGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGATGACTACTGTTTCCCAACTGTATGA 1716 0.4196 MLSQKLQKTSTCFWFGSRGRNHVDSCSICFNDATALKKEKISKKKFFFFLSFSLSLFTLLCAKTKTTHKVPLICQDSPLFHSICDFDLIVLMESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREAVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELNSNSSRRGNSSTQVIALDSTMGEEESDSKHLSSLVEAKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSINPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILHSYQGTKYLGSSLQNKPQFPFQNIFQSGILFHGKHAQNSQSGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLAGSRILHGIHIQDRDDLVSQTSLRITSSADKYAANESFPCNTASKDVIKNQTAPLSNAVHALQDHHGDDICQPSDLFDIKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENDDYCFPTV 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1242g00002 571 Gene3D - 260 331 IPR036893 GO:0003677|GO:0005634
Vium1242g00002 571 FunFam Squamosa promoter-binding-like protein 14 261 331 - -
Vium1242g00002 571 Pfam SBP domain 270 343 IPR004333 GO:0003677
Vium1242g00002 571 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 200 464 IPR044817 GO:0003677
Vium1242g00002 571 ProSiteProfiles Zinc finger SBP-type profile. 267 344 IPR004333 GO:0003677
Vium1242g00002 571 SUPERFAMILY SBT domain 268 349 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1242g00002 Vium-Chr1242 8333 13975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1242g00002 92 569 SBP-box Gene Family AT1G69170 37.247 8.20e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium1242g00002 SBP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1242g00002 - - vum:124825483 1112.44