Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1242g00001 ATGCTGTCTCAAAAGCTACAAAAGACCTCAACATGCTTTTGGTTTGGTAGTAGAGGAAGAAATCATGTTGACTCATGCTCTATCTGCTTCAACGATGCCACTGCTCTGAAAAAAGAAAAAATCTCTAAAAAAAAGTTCTTTTTCTTTCTCTCTTTCTCTCTCTCACTGTTCACTCTGCTGTGTGCCAAAACTAAAACCACTCACAAGGATTCTCCATTATTTCACAGCATCTGTGACTTCGATTTGATTGTACTAATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCGTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGCTGTTAAAAGCATGGAATTTGTGGACTTGGGTTTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAACCTCTAGAGACATCAAGCTATGAACTAAATAGTAATTCTAGTAGAAGAGGGAATTCCTCTACACAAGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAGCGAAGACTCATGATTCTTCCCTGATTGATCTGAAGCTTGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGCAAAAGAAGGGTTTACTTTGACATCCATAAATCCAACTACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACGGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTGGCCGAGTTCGACGATGGCAAGCGCAGTTGCCGCAGGCGCCTAGCTGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCACTCATATCAAGGTACCAAGTATCTTGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTTCAAAGTGGCATCCTTTTCCATGGAAAACATGCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGCCATGCAGCAGGAAATCCATTAGCCGGTTCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCCAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACCGCCTCTAAGGATGTTATCAAGAATCAAACCGCACCATTATCTAATGCAGTTCATGCTCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACCTGTTTGACATCAAACACCGTCTTTCCTCGGAACATGGAGCTACGGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGATGACTACTGTTTCCCAACTGTATGA 1698 0.4187 MLSQKLQKTSTCFWFGSRGRNHVDSCSICFNDATALKKEKISKKKFFFFLSFSLSLFTLLCAKTKTTHKDSPLFHSICDFDLIVLMESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREAVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELNSNSSRRGNSSTQVIALDSTMGEEESDSKHLSSLVEAKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSINPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILHSYQGTKYLGSSLQNKPQFPFQNIFQSGILFHGKHAQNSQSGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLAGSRILHGIHIQDRDDLVSQTSLRITSSADKYAANESFPCNTASKDVIKNQTAPLSNAVHALQDHHGDDICQPSDLFDIKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENDDYCFPTV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1242g00001 565 FunFam Squamosa promoter-binding-like protein 14 255 325 - -
Vium1242g00001 565 Pfam SBP domain 264 337 IPR004333 GO:0003677
Vium1242g00001 565 ProSiteProfiles Zinc finger SBP-type profile. 261 338 IPR004333 GO:0003677
Vium1242g00001 565 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 194 458 IPR044817 GO:0003677
Vium1242g00001 565 Gene3D - 254 325 IPR036893 GO:0003677|GO:0005634
Vium1242g00001 565 SUPERFAMILY SBT domain 262 343 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1242g00001 Vium-Chr1242 8333 13975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1242g00001 86 563 SBP-box Gene Family AT1G69170 37.247 6.15e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium1242g00001 SBP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1242g00001 - - vum:124825483 1093.18