Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12416g00001 ATGGATGATCACTTGATCTCATTCTTACCCTTTTTTCTATTCACTAGTTTCATCTTTTTTGTTTCACAGTGTCTAAAAGTGGGAAAGAGATATAAAACCTCAGTGAAAACATTGAAGCTTCCCCCAGGGCCATGAAGCTTACACCACTTAGTTGGCTCTCTACCCCATCATCGTTTGAGAGAACTTGCTAAAAAACACGGTCCTCTCATGCACCTACAACTTGGTGAGACATCAACCATCGTGGTTTCTTCTCCAGAAGTGGCCAAAGATGTCATGAAAACCTATGATGCCATCTTTGCTCAAAGACCCCATCAAATTGCGGCAGACATCATGTGTTATGGTTCCATTGACATACCATATGGAGGGTATTGGAAGCAGCTAAGAAGAATATGCTCACAAGAGCTTCTAAGCAACACACGTGTGATGTCATTTCGATCAATAAGAGAAGCAGAAGTGCTGAATTTAGTAAGATATATTGAGGCCAACACTGGTTCTTGTGTGAACCTCAGTGAAAAATTAGCATGCATGACAAGTATCAACTGCAAGGATCAAGAAGAGTTCATTTCCCTTGTCAAGAAACTTATAAAAATGGCCGAAAGTCTAATTATTTCTGTTTTGTTCCCTTCTCAAAAATGGCTTCATGTGATCAGTGGGGAGAAAACTAGAGTGGAGGAGTTGCACAGAAAATATGATGTAATAATTGGAATCATCATTACAGAGGCAGAAAAATATATTGGTGAAGTAGAGGTTAATAGTCTGCTCTCAGTTCTTCTAAATATGAAAAATCAAGGTGCCCTCGAATATCCTTTAACAATCGATAACATCAAGGCTGTAATGTGGAACATGTTTGCTGCTGGAACTAATTCATCACCTTCAGTCATATCATGGGCCATGTCAGAGATGTTGGAAAACCCAAAAGTATTAAACACAGCTCAGGAAGAAGTTAGAAGAGTTTTTGGTAGTAAAGGATACATGAATGAAGAATCACTTGAAGAACTAAAATATCTGAAAGCAGTGATCAAAGAAACACTGAGATTGCACCCTCCTTCCCCTCTTCTAGTTCCAAGGGAATGTAGAGAAAGTTGTGAGGTGAAAGGGTATACAATACCTGCTGGGACCAAAGTGATGGTAAATGCATGGGCAATTGGAAGAGACCCTGATTATTGGAATGATCCAGACAAGTTTTATCCTGAGAGATTCATGAACAGTCAAATCGATTATAAAGGATCCCATCATGAATTCATACCCTTTGGTGCTGGAAGGAGAATTTGTCCTGGCATGTCTTTTGGGACAAATATCATTGAACTTTGTCTTGCACAACTACTTTACTATTTTAATTGGAAACTTCCAAATGGAAACAAGGAAAACTTGGAAATGACTGAAGCTTTGGGAGCCTTCTCAAGCAGGAAAACAAATCTAGTATTAGTTCCCGTTTCTCATAATCCTTTTCCTATTTCATCAGACCATAATTAA 1473 0.3876 MDDHLISFLPFFLYXTSFIFFVSQCLKVGKRYKTSVKTLKLPPGPWXSLHHLVGSLPHHRLRELAKKHGPLMHLQLGETSTIVVSSPEVAKDVMKTYDAIFAQRPHQIAADIMCYGSIDIXPYGGYWKQLRRICSQELLSNTRVMSFRSIREAEVLNLVRYIEANTGSCVNLSEKLACMTSIIXCKDQEEFISLVKKLIKMAESLIISVLFPSQKWLHVISGEKTRVEELHRKYDVIIGIIITEAEKYIGEVEVNSLLSVLLNMKNQGALEYPLTIDNIKAVMWNMFAAGTNSSPSVISWAMSEMLENPKVLNTAQEEVRRVFGSKGYMNEESLEELKYLKAVIKETLRLHPPSPLLVPRECRESCEVKGYTIPAGTKVMVNAWAIGRDPDYWNDPDKFYPERFMNSQIDYKGSHHEFIPFGAGRRICPGMSFGTNIIELCLAQLLYYFNWKLPNGNKENLEMTEALGAFSSRKTNLVLVPVSHNPFPISSDHN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12416g00001 494 PANTHER OS08G0105600 PROTEIN 59 486 - -
Vium12416g00001 494 PRINTS P450 superfamily signature 289 306 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS P450 superfamily signature 419 428 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 341 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 418 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 382 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 278 295 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 298 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 PRINTS E-class P450 group I signature 428 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 CDD CYP71-like 67 477 - -
Vium12416g00001 494 Pfam Cytochrome P450 45 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 Gene3D Cytochrome P450 32 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 421 430 IPR017972 GO:0005506|GO:0016705
Vium12416g00001 494 SUPERFAMILY Cytochrome P450 39 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium12416g00001 494 FunFam Cytochrome P450 99A2 31 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12416g00001 Vium-Chr12416 12770 14542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12416g00001 42 484 Cytochrome P450 AT3G26320 39.530 1.82e-110 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12416g00001 - K23807 gmx:100779851 729.169