Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1240g00003 ATGTCTTCTACTTCTTCTTCTTCTTCTTCCTCGTCATCATCGTCATCATCAACTTCAGCCCCATATGATGTTGTTGCTGCTCCTGATATCCCTGGCCCTAGTACGAGGAGAACCGCTCAATTTGAAGGCCCTTCCTCCTCTCGTCAACGTCCTATGAATGAGGTCTTGCCTGAGCCTTTTCTTGAAGCTTTGGCCAACCAAGTCGCCATTGATGCTGCCAACTACAATGGACGTCTTGCTGCTGCTCAGGCCCTTGCATATTTTTTTCGGGTTTGTTCCACGTGGCGGGAGGTGTCGCGCTCGGATCTGCTGTGGGAGCACCTCACGAGGCGCATCTGGCGAAGGACGTTCCGAGTGAGGGACACGTGGCACACCGAGTACATCAACTGGCATCGGACGGCTACGAACTTCGAGACTGGAAGGCTGTCGTTTCTGACTCCGCGCTTTGATCCTTCGGAGCATCGCCGGGGCTTGATCTGCCGCTGCCTCTCCCTTTCCGACACCCGCCTCGCGTGCGGCTTCGTAGACGGCACCGTGCGGGTCTTCGACCTCGAAACCTACGACCACGTCAGCACCTACCTGTCCGACCACGGCCACCTCTTCGGGCCCTACTCGCGCTCTGTCTCGGGAATCATTATCACCGACTCCGACATCACCTTCGCCAGGCTGGACGGGGACATCTACGTGGACGCTATCAACGTGCATGGGCAGAGCCAAGCGCGGCGGGTCGTGTCGGGGTTCGTGATGAACAGCGGGGTCTTGGTCGGGTTCGCGGGAACGCGGCGGCGGTGGGTGGGTCTGTTCGCGGGGATAGCGGAAGGTGCGTTCCAGGTTTGGAACGCGGAGAGCGGGGAGCGCCTGTTCCTTGGGGGGTCGTTAACTGATCCGGAAACGGTTATGGGGTGGCACATGCTGACGGAGTTGGTTGACCCGGTGGGGCGGGTGCGCGTGACGGAGGATGAGTTCGTGGTGGCATGCACTGGTTTGAGGCTGATCTGTTTCAACGCGTGGAACCCGGAGGTTCTTCTACGGGACGAGATGTCGGCGTCGGGGTTCGTGGTGAGTTCGATGGACGTGAGTTCGGAGGCGTTTGTGGTGGTGGAGCGTGGTGGGGTGGGAACGGTTTGGCGCGTGGGGACGATGGAGTTGATGAGCCGGTTTGTGTTGAGGAGTTCGTGGGTTCGTGGGTTGTGGGGTTGCATGAACCTTGGGTACGTGGTAACCTATTCTCCTAACCCTACGCCATTCTTGAGGGTTTGGAACATTGAGCAAGAAGAAGGACGGCTGTGTGTGAGAGTGTTCCTGCGAGCAGGAGAGGTGAATAGCATGGTGGGTGATGACAGACACGTGGCTATCTCTTCCAACAACATTAACCTATTGGATTTTGGTGTACAGAATCCTTAG 1404 0.5762 MSSTSSSSSSSSSSSSSTSAPYDVVAAPDIPGPSTRRTAQFEGPSSSRQRPMNEVLPEPFLEALANQVAIDAANYNGRLAAAQALAYFFRVCSTWREVSRSDLLWEHLTRRIWRRTFRVRDTWHTEYINWHRTATNFETGRLSFLTPRFDPSEHRRGLICRCLSLSDTRLACGFVDGTVRVFDLETYDHVSTYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHGQSQARRVVSGFVMNSGVLVGFAGTRRRWVGLFAGIAEGAFQVWNAESGERLFLGGSLTDPETVMGWHMLTELVDPVGRVRVTEDEFVVACTGLRLICFNAWNPEVLLRDEMSASGFVVSSMDVSSEAFVVVERGGVGTVWRVGTMELMSRFVLRSSWVRGLWGCMNLGYVVTYSPNPTPFLRVWNIEQEEGRLCVRVFLRAGEVNSMVGDDRHVAISSNNINLLDFGVQNP 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1240g00003 467 Gene3D - 50 137 - -
Vium1240g00003 467 MobiDBLite consensus disorder prediction 1 52 - -
Vium1240g00003 467 MobiDBLite consensus disorder prediction 1 22 - -
Vium1240g00003 467 PANTHER WD40 REPEAT PROTEIN 12, 37 6 424 - -
Vium1240g00003 467 Gene3D - 138 463 IPR015943 GO:0005515
Vium1240g00003 467 SUPERFAMILY WD40 repeat-like 154 455 IPR036322 GO:0005515
Vium1240g00003 467 SUPERFAMILY F-box domain 84 132 IPR036047 GO:0005515
Vium1240g00003 467 MobiDBLite consensus disorder prediction 38 52 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Vium1240g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1240g00003 - - gmx:100807240 634.795