Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12408g00004 ATGGACAATCTTCATCAAAAGTTGGAAGAACTTGCACGCGGGATGGCTTGGGATTTGCATGCTATTGTGGGATGTACAATTGCCCCAGCCACCAATATGGACAACCCGAATCTCATTCTTTCTCAACATTTTTGTGCTGAACAAAATGACCTACTTTGCAATTTTCAGGAATTCTCAGAAACCAAAACGGTGCTTGATGAATTGGAAGAGATTTATAAACCTTTCTACCCCCAAATTCGTAACAGTTCCATCATTTCAAGTTCCCAACCCGTCCCTGATAAAACTGTCAAAAAACTCAAACCATCAAACACCGCAGTCTCTAAATGCAGAAAAAGCAAGAAGAAGCTGAAGAGCAAGAGGGAGGTGAAGCATATGACAGCTGCAGATGGTGTGTCAGACCCATGGGCATGGCGTAAATATGGACAGAAACCGATAAAGGGATCACCATATCCACGTAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTTGGCTAGGAAACACGTGGAACGTAGCCATTTGGATCCCGGACTTTTCATAGTTACCTACACCGCAGAACACAGCCCTCACCAAGCTCGAAAAAACTCAACTTCCACCATTGCACCTCCTCCAACAACGAAGCGACATGGCTTAAAAGTTTCCCTATCATTTTCTCCAAACTTTCTTTTGTTTAATCTACAGTAA 684 0.4298 MDNLHQKLEELARGMAWDLHAIVGCTIAPATNMDNPNLILSQHFCAEQNDLLCNFQEFSETKTVLDELEEIYKPFYPQIRNSSIISSSQPVPDKTVKKLKPSNTAVSKCRKSKKKLKSKREVKHMTAADGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKHVERSHLDPGLFIVTYTAEHSPHQARKNSTSTIAPPPTTKRHGLKVSLSFSPNFLLFNLQ 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12408g00004 227 ProSiteProfiles WRKY domain profile. 126 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12408g00004 227 FunFam WRKY transcription factor 22 114 185 - -
Vium12408g00004 227 Gene3D WRKY domain 108 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium12408g00004 227 SUPERFAMILY WRKY DNA-binding domain 125 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium12408g00004 227 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 49 204 IPR044810 GO:0003700
Vium12408g00004 227 SMART WRKY_cls 131 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12408g00004 227 Pfam WRKY DNA -binding domain 133 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12408g00004 Vium-Chr12408 9696 10675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12408g00004 17 196 WRKY Transcription Factor Family AT4G01250 41.872 1.92e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium12408g00004 WRKY 2.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12408g00004 K13426 - gmx:102667019 244.973