Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12399g00002 ATGACAGATCCTAAGTCCAACATGTTCAATGAATGGTTCAACTTCATGCTCTTCCAACCTCACTACTCTTCCTCTTCCTCTTCTCAACCCTACCACCACCCTCTTGCCAATTACTCAAACAACAGGTTTGGAATTCAATTACAAGGACCCTCATCTTCATCTTTATCTTCATCTTCATCTTCATCTTCATATTCATATGCATATGCATATGCAGCAGCTCCTCCTCCTCCTTCTTCCCCTCCTCTGAGAGAGGCACTTCCTCTCATCAACAAGATAAGCCTGACAGGTGAGCAGCTCCAAGAAAATGAACCCTCAAATGTTGTTGTGGAAGAGAGAGAAGAGGAGAAGGTGGAGAACAATGGAGAAGATGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTGTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACTTGTATGGAAATGGGTGAAAAAGAGGAAGTGAACATAATTTCTGAGCACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCAAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTGAAAGGAACACAGCCAACAGCTATGCTGAGGCTTCCATGCTTTTGTTGTGCAGCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGTATTAAACCCTACATGTGCAGAAAGTGCAGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGCGGCAAAATATGGTATTGCTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAGATTGAACACGATGGAGAACATTCAATATGA 1071 0.436 MTDPKSNMFNEWFNFMLFQPHYSSSSSSQPYHHPLANYSNNRFGIQLQGPSSSSLSSSSSSSSYSYAYAYAAAPPPPSSPPLREALPLINKISLTGEQLQENEPSNVVVEEREEEKVENNGEDGDEETVTVALHIGLPRMDTCSDLGSSRVSSTCMEMGEKEEVNIISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAAGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGEHSI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12399g00002 356 MobiDBLite consensus disorder prediction 99 125 - -
Vium12399g00002 356 FunFam Zinc finger protein WIP2 248 330 - -
Vium12399g00002 356 SUPERFAMILY beta-beta-alpha zinc fingers 263 299 IPR036236 -
Vium12399g00002 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 222 IPR013087 -
Vium12399g00002 356 FunFam zinc finger protein WIP2-like 194 217 - -
Vium12399g00002 356 Gene3D Classic Zinc Finger 194 217 - -
Vium12399g00002 356 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Vium12399g00002 356 SMART c2h2final6 195 217 IPR013087 -
Vium12399g00002 356 SMART c2h2final6 279 299 IPR013087 -
Vium12399g00002 356 PANTHER ZINC FINGER PROTEIN WIP2 51 351 IPR043584 GO:0003700|GO:0010468
Vium12399g00002 356 SUPERFAMILY beta-beta-alpha zinc fingers 191 217 IPR036236 -
Vium12399g00002 356 Pfam C2H2-type zinc finger 195 214 - -
Vium12399g00002 356 Gene3D Classic Zinc Finger 258 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12399g00002 Vium-Chr12399 3730 6508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12399g00002 1 354 C2H2 Transcription Factor Family AT3G57670 53.000 4.93e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium12399g00002 zf-C2H2_6 2.8e-05 CL0361