Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12375g00003 ATGCTTGTCTTCTTTATTATCAACTCTCTCTTGTGTGTCCCAAGCACAGCTACCTCTATATTGGGAAACCAGACCGACCATTTGGTGCTGCTCAAATTTAAGGAATCAATATCAAATGATCCTTACAAAATCATTGCCTCTTGGAATAGTTCCATCCATTTTTGCAACTGGCCTGGGGTTACATGTGAGTCCATGAATCAAAGAGTTATAGAGTTAAACCTAGAAGGAAAACAGTTACAAGGTCTCATACCACCCCATATAGGCAATCTCTCTTTCCTAACCAGGCTTAACCTTGGAAACAACAGCTTTAGTGGAAAAATTCCACAAGAACTGGGTCGGTTGTTACAGTTACAAAACTTATCTCTCACCAATAACTCTTTGAAAGGAGAAATACCTGCAAACTTGACAAGATGTTCTAACCTTAGAGAGTTACACTTGTTTGGTAACAATTTGATTGGTGAAATACCAATGGAAATTGGCTACCTGCAAAAGCTTCAAGAACTGACCTTGGCAGTAAACAATCTCACAGGAGTAATCCCATCTTCCATAGGGAATCTTTCATCTCTCGTTTCTCTCTCAATCGGTGTCAATTACTTCGAGGGATATATTCCACAAGAAATTTGTCTCCTCAAAAACTTGTCATTGATGTCATTGCATGTCAACAAGCTGATAGGTACATTTCCTTCTTGTCTTTACAATATGTCATCTCTTACCATTATTTCAGCTGCAGACAATCAATTTAATGGCTCCCTTCCACCAAACATGTTCCACACTCTCCCTAATCTCCGAGAATTCCTTGTTGGTGGGAATCATATCTCAGGTTCAATCCCAACTTCCATTGCAAATTCATCTGTCCTCCAAACACTTGATGTTGGTACAAATCATTTACAGGGCCAAGTTCCAAGTCTTGGAAAGCTGCAATACCTTTGGTTCCTTAGTCTGTATAGTAATAACTTAGGTGACAATACGACAAAGGACTTGGAGTTTTTAAAATCCTTAGCCAATTGTAGCAAGTTAGAAATGGTTTCTATTTCCTATAATAGTTTTGGAGGTAGTTTGCCGAATTTTATGGGAAATTTATCCACCAAACTTAGTCAATTATATCTTGGGGGTAATCACATATCAGGAAAAATTCCTGCAGAAATAGGCAATCTAGTTAGCTTAACTATCTTGACCATGGAAGTTAACCACTTTGAAGGAGTTATTCCAGCCACTTTTGGAAAGTTCCAGAAACTACAAAAGTTGGAGTTAAGTAGGAACAAGTTGACAGGAGATATTCCAGATTTTATAGGCAACCTCACTCAGTTGTATTATTTGGGCATGGCAGAAAATATGTTTGAAGGAAAGATTCCTCCAAGTATAGGAAACTGTCAAAATTTGCAATACCTTAACCTTTGGAAAAACAACCTTGTAGGAAGCATACCCTTAGAGGTTTTTAGTCTTTTCTCGTTAACAAACTTACTGGACTTGTCACAAAATTCACTGAGTGGTAGGCTTCCTGATGAAGTTGGCCGGTTAAAAAATATAGGAAAGATGAGTGTGGCCGAAAATAATCTGTCTGGTGAAATCCCTGAAACCATTGGAGACTGTATAAGCTTGGAGTACCTTTGTCTGCAAGGAAACTCCTTTCATGGAATCATACCTTCCTCTTTAGCTTCACTCAAAGGTCTTCGAGTATTAGACATGTCACGAAATCTTCTGAATGGATCAATTCCTAAGGATCTACAACATATTTCTTTCTTAGAATACTTCAATGTATCTTTTAACATGTTGGAGGGTGAAGTACCACTGGAAGGTGTCTTTCAAAATGCAAGTGAGTTAGCCGTGGCTGGGAACAATAAGCTCTGTGGGGGTGTTTCACAGTTGCATCTACCACCGTGTCCTATCAAAGGTAAGAAACCTGCAAAACACTTGAATTTTCTATGGATCGCAATGGTGGTAGTTAGTGCAGTTGTTTTTGTTCTCGTTCTGCCATTTTTTGTATCTATCTACCGGTTGAGGATAAGAAAGCACAAAAATCCATCGTCTGATTTGCCAATTATAGACCCAGTGGATAAGGTTTCATACCAAAACCTACACCAAGGAACCGATGGGTTTTCAGTTAAAAATTTGATAGGATCTGGAAGTTTTGGCTCCGTATACAAAGGGACTATTGAGTTAGAAGGAGAAGAAAATGTTGTAGCCATAAAGGTCGTAAACCTTCAACAGAAGGGAGCTCAAAAAAGTTTCATTGCCGAATGTAATGCGTTGAAAAATATTAGGCATCGAAACTTGGTGAAGACTGTAACATGTTGTTCTAGCATAGATCACAGAGGCCAAGAATTCAAAGCTCTTGTTTTTGAGTACATGATAAATGGAAGCCTAGAAAGATGGTTGCATCCAGAAATAGAAACCTCAAAGCAGCCCGCTAGATCATTAAACATTGACCAAAGATTAAACATTATCATTGATGTTGCTTCTGCTATTCACTATCTTCACTACGAATGTGGGCAAGCAATTATTCACTGTGATTTGAAGCCAAACAATGTTCTTCTCGATGATTGTTTGGTAGCTCATGTAAGCGACTTTGGTTTAGCTAGAAGACTCGCAACTATTGCAGTTTCTCCAAAACAAACTAGCACTATTGAAATAAAGGGCACAGTTGGTTATGCTCCTCCAGAATATGGAATGGGATCAGAGGTGTCTGTAGAAGGCGACGTGTACAGCTTTGGAATTATTGTTTTGGAAATGTTGACCGGGAGAAGACCAATAGATGAAATGTTTGAAGATGGTCTTAATCTCCATAACTACGTCAAAATTTCAATTCCAAACCACCTTCCCCAGATTGTGGACCCAACTATTCTTCCAAATGGTATAAAGGTGGCTGCTATTAGCCAAAATCTTCTTCCAGTGCATCCTTTGGTAGAGAAATGCTTACTGCCACTTTTTAGGATTGCACTTGCTTGTTCAAAGGAGTTGCCGAAAGAAAGAATGAGTATGGTTGATGTCATTAGGGAGCTTCATTTGATCAAAAGTTCCTTTTCATCATGA 3030 0.3875 MLVFFIINSLLCVPSTATSILGNQTDHLVLLKFKESISNDPYKIIASWNSSIHFCNWPGVTCESMNQRVIELNLEGKQLQGLIPPHIGNLSFLTRLNLGNNSFSGKIPQELGRLLQLQNLSLTNNSLKGEIPANLTRCSNLRELHLFGNNLIGEIPMEIGYLQKLQELTLAVNNLTGVIPSSIGNLSSLVSLSIGVNYFEGYIPQEICLLKNLSLMSLHVNKLIGTFPSCLYNMSSLTIISAADNQFNGSLPPNMFHTLPNLREFLVGGNHISGSIPTSIANSSVLQTLDVGTNHLQGQVPSLGKLQYLWFLSLYSNNLGDNTTKDLEFLKSLANCSKLEMVSISYNSFGGSLPNFMGNLSTKLSQLYLGGNHISGKIPAEIGNLVSLTILTMEVNHFEGVIPATFGKFQKLQKLELSRNKLTGDIPDFIGNLTQLYYLGMAENMFEGKIPPSIGNCQNLQYLNLWKNNLVGSIPLEVFSLFSLTNLLDLSQNSLSGRLPDEVGRLKNIGKMSVAENNLSGEIPETIGDCISLEYLCLQGNSFHGIIPSSLASLKGLRVLDMSRNLLNGSIPKDLQHISFLEYFNVSFNMLEGEVPLEGVFQNASELAVAGNNKLCGGVSQLHLPPCPIKGKKPAKHLNFLWIAMVVVSAVVFVLVLPFFVSIYRLRIRKHKNPSSDLPIIDPVDKVSYQNLHQGTDGFSVKNLIGSGSFGSVYKGTIELEGEENVVAIKVVNLQQKGAQKSFIAECNALKNIRHRNLVKTVTCCSSIDHRGQEFKALVFEYMINGSLERWLHPEIETSKQPARSLNIDQRLNIIIDVASAIHYLHYECGQAIIHCDLKPNNVLLDDCLVAHVSDFGLARRLATIAVSPKQTSTIEIKGTVGYAPPEYGMGSEVSVEGDVYSFGIIVLEMLTGRRPIDEMFEDGLNLHNYVKISIPNHLPQIVDPTILPNGIKVAAISQNLLPVHPLVEKCLLPLFRIALACSKELPKERMSMVDVIRELHLIKSSFSS 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12375g00003 1009 SUPERFAMILY L domain-like 24 319 - -
Vium12375g00003 1009 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Vium12375g00003 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 330 633 - -
Vium12375g00003 1009 Gene3D Phosphorylase Kinase; domain 1 680 782 - -
Vium12375g00003 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 670 782 - -
Vium12375g00003 1009 Pfam Protein kinase domain 700 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12375g00003 1009 PANTHER RECEPTOR-LIKE PROTEIN 55 359 1005 - -
Vium12375g00003 1009 Gene3D Ribonuclease Inhibitor 26 136 IPR032675 -
Vium12375g00003 1009 Gene3D Ribonuclease Inhibitor 248 325 IPR032675 -
Vium12375g00003 1009 Gene3D Ribonuclease Inhibitor 326 635 IPR032675 -
Vium12375g00003 1009 SUPERFAMILY L domain-like 363 617 - -
Vium12375g00003 1009 SMART LRR_typ_2 259 283 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 385 408 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 481 506 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 114 138 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 234 258 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 162 185 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 554 577 IPR003591 -
Vium12375g00003 1009 SMART LRR_typ_2 409 433 IPR003591 -
Vium12375g00003 1009 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 62 329 - -
Vium12375g00003 1009 ProSiteProfiles Protein kinase domain profile. 699 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12375g00003 1009 SUPERFAMILY Protein kinase-like (PK-like) 672 1002 IPR011009 -
Vium12375g00003 1009 SMART serkin_6 699 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12375g00003 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Vium12375g00003 1009 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vium12375g00003 1009 Gene3D Ribonuclease Inhibitor 137 247 IPR032675 -
Vium12375g00003 1009 ProSitePatterns Protein kinases ATP-binding region signature. 705 730 IPR017441 GO:0005524
Vium12375g00003 1009 Gene3D Transferase(Phosphotransferase) domain 1 783 1008 - -
Vium12375g00003 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 783 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12375g00003 Vium-Chr12375 10966 14085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12375g00003 23 1007 Receptor kinase-like Gene Family AT3G47570 45.884 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vium12375g00003 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12375g00003 - - gmx:100786600 1606.27