LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium12375g00002	ATGGCTTGGAATGGAATTTCCGTGAGGCGCAGTGAACCGGAAGTGGTGGTGCCGGCAAAAGCTACTCCGAGTGAAGTAAAGCATCTTTCGGACATTGATGACCAAGAAGGGCTTCGCATGCAGCTCTCCTTCATCATGTTCTATAAAAGGGAGGAGGCAATGAAGGAGTTTGATCCTGCCATGATCATAAAAAGGGGAATCTCTGAAGCTCTCGTTCACTACTATCCCTTGGCTGGGAGGGTGGCGGAAGGGTCTAACAGAAAGCTGGTGGTGGAGTGCAGCGGTGAGGGGGTTATGTTTGTTGAAGCTGAGGCTGATGTTGCATTGGAGGAGCTTGGTGACTCAATTGGACCACCTTGTCTCCATAGGAAACACTTCCTCTATGCACTGCCTGCATCTCAAGGAATTCTTGCCTCTCCTTTGTTGTTCATTCAGGTAACTCGTCTTTCATGCGGAGGGTTCGTATTTGCCGTGTGCATGAATCACGTCGTGAGCGACTCTTTCGGGCTGGTTCAGTTCCTCAACACGGTGGCAACAATGGCAAGGGATCCACACGCCGCAATCCAACAACCGGTGTGGAGAAGAGACATATTTAGCGCACGCAACCCTCCATGTGTGACTTGCACACACCACGAGTACGAGGATGTTGTCCACCATAGTACTACAACTACTTCTTCACAGGAAGACTTGTCTCACGAATCATTTTTCTTTGGGAAGAAAGAGATTCAAACGCTTCGAAATCATCTTCCCCAGAACCTTCAGAAATGCTCAACTTTCGAGTTACTTACGGCATGCTTATGGAAGTGTCGTACAATGGCGCTTGATCTTGACCCCAACGAGGTGGTTGGTGTGTCGAGTTTCGTCACTACTCATGGGAAGGTGGATGTGCCAAAAGGGTATTATGGGAATGCGTTTGTGTTTCCAATGGCACTATCAAAGGCTGGTTTGCTGTGCAAAAGCTCGTTAGGGTATGCTTTGGGGTTGATCAGAGAAGCCAAGGGTCGAATGAGTGAAGAGTACGTTAGGTCAGCGGTTGATCTTATGGTTCTGAAGGGGCGTCCTATGTATAGGACACATGGGAGTTTCTTTGTAGGGGATATGACTCGTGTGGGTTTTGGTGAAGTTGATTTTGGTTGGGGAAAGCCCGTTTATGGAGGTCCTGTTGGAGCCATACCATTAGTCAGCTACCTTGCAAGGTTCAAAAATGGTAGAGGCAAAGATGGGATTATGGTGCCAATATTGTTGCCACAGCTTGTCATGAAAAGGTTTCTCAGGGAGCTCACCAAAATGACTAGTCCCGACATCAAAACAAGAGCTAGATCCATGATATAA	1332	0.479	MAWNGISVRRSEPEVVVPAKATPSEVKHLSDIDDQEGLRMQLSFIMFYKREEAMKEFDPAMIIKRGISEALVHYYPLAGRVAEGSNRKLVVECSGEGVMFVEAEADVALEELGDSIGPPCLHRKHFLYALPASQGILASPLLFIQVTRLSCGGFVFAVCMNHVVSDSFGLVQFLNTVATMARDPHAAIQQPVWRRDIFSARNPPCVTCTHHEYEDVVHHSTTTTSSQEDLSHESFFFGKKEIQTLRNHLPQNLQKCSTFELLTACLWKCRTMALDLDPNEVVGVSSFVTTHGKVDVPKGYYGNAFVFPMALSKAGLLCKSSLGYALGLIREAKGRMSEEYVRSAVDLMVLKGRPMYRTHGSFFVGDMTRVGFGEVDFGWGKPVYGGPVGAIPLVSYLARFKNGRGKDGIMVPILLPQLVMKRFLRELTKMTSPDIKTRARSMI	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium12375g00002	443	Gene3D	-	3	211	IPR023213	-
	Vium12375g00002	443	Pfam	Transferase family	8	426	-	-
	Vium12375g00002	443	Gene3D	-	212	426	IPR023213	-
	Vium12375g00002	443	PANTHER	ACYL TRANSFERASE 4	6	430	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium12375g00002	Vium-Chr12375	3092	10325	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium12375g00002	6	392	Monolignol Biosynthesis Gene Families	AT5G48930	29.703	5.00e-46	163

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium12375g00002	K19861		-	gmx:100817429	543.117