Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12356g00001 ATGTTGATACTGGTTCTTGGACTAGTTTCAGCTACTTTGTTAGTGATTGTTGCAGGTTATGTGTTGTATTGCAAGAAAAGAGTATCAAGGTATGAGAGTAAGGACATTGAAAGCTCGGAACACAAGGAGGAGGAGGTGGCTCAGAAGGAGGATTTGATGATCTTTCAAGGTGGGGATGACCTTACAATATGTGACATATTGGATGCTCCGGGGGAAGTGATTGGAAAATCCAACTATGGAACACTGTATAAGGCCTTGTTGCAGAGGAGCAACAAGGTGAGGCTGCTCAGGTTTCTTAGGCCAGTGTGCACTGCAAGAGGTGAAGAATTGGATGAGATGATTCAGTTTCTTGGAAGGATTAGGCATCCTAACTTGGTTCCTCTTCTGGGGTTTTACACTGGGCCAAGGGGTGAGAAGCTTCTTGTTCATCCCTTCTATAGACATGGGAATCTTACTCAATTCATAAGAGATGGAAATGGAGAGTGTTACAAATGGTCAAACATATGCAGAATATCCATTGGTATAGTGAAAGGATTGGAGCATCTTCACACATCACAGGAGAAGCCTATTATCCATGGAAACCTCAAGTCTAAGAACATCCTTTTGGACCGCTCCTACCAGCCCTACATCTCAGATTCTGGCCTACATCTTCTGCTGAATCCTACTGCTGGACAAGAAATGCTTGAAAGTTCAGCAGCACAGGGTTACAAGGCACCTGAGCTCATAAAAATGAAGGATGCTACTGAAGAGAGTGATATATATAGCCTTGGTGTGATCTTGCTGGAACTGCTTTCAGGAAAGGAACCTATCAATGAGCACCCTACTCCTGATGAGGATTTCTATTTGCCAAATTTCATGAGAAATGCAGTCCTTGGACACAGAATTGCTGATCTATACCACCCTGCCATTCTTCTCAGAAACAGCAGAGAGGATAGTGTTCCAGTCACAGAAGAATTCATCCTCAAAGTTTTTCAACTTGCTATGGCTTGTTGCTCCCCTTCACCCTCAGTTAGACCTAACATAAAGCAAGTCCTCAAGAAACTTGAAGAAATTATGTTCTAG 1062 0.4303 MLILVLGLVSATLLVIVAGYVLYCKKRVSRYESKDIESSEHKEEEVAQKEDLMIFQGGDDLTICDILDAPGEVIGKSNYGTLYKALLQRSNKVRLLRFLRPVCTARGEELDEMIQFLGRIRHPNLVPLLGFYTGPRGEKLLVHPFYRHGNLTQFIRDGNGECYKWSNICRISIGIVKGLEHLHTSQEKPIIHGNLKSKNILLDRSYQPYISDSGLHLLLNPTAGQEMLESSAAQGYKAPELIKMKDATEESDIYSLGVILLELLSGKEPINEHPTPDEDFYLPNFMRNAVLGHRIADLYHPAILLRNSREDSVPVTEEFILKVFQLAMACCSPSPSVRPNIKQVLKKLEEIMF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12356g00001 353 Gene3D Phosphorylase Kinase; domain 1 33 145 - -
Vium12356g00001 353 Pfam Protein tyrosine and serine/threonine kinase 72 348 IPR001245 GO:0004672|GO:0006468
Vium12356g00001 353 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 39 351 - -
Vium12356g00001 353 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12356g00001 353 Gene3D Transferase(Phosphotransferase) domain 1 147 353 - -
Vium12356g00001 353 SUPERFAMILY Protein kinase-like (PK-like) 71 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12356g00001 Vium-Chr12356 1789 5205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12356g00001 35 351 Carbohydrate Esterase AT5G61570 60.308 1.96e-135 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium12356g00001 PK_Tyr_Ser-Thr 4.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12356g00001 - - gmx:100802295 667.537