Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12353g00001 ATGTCTACTGCAGCCAAGGAGTACTTCTTCAAAATCTTCTCCCCAGAAAAGCACTCTGAAACAATGGTTATTCCAAGTTCTTTTGTGAAGTCCAGAGGTTTAGGAAGAAGGACAATCCCTAAAGATATAATCCTCAGAAATGTTAGTGGTAGGGTTTGGTGTGTTAAAACTCGTATTATTGGACACAAAATCTACTTTGGATCGGGTTGGAAGAGTTTCCAAGAAGAGAACTGTATAAGAAAAGCAGATTTTATGCTTTTCAAGTATGATGGGACCAATGTATTTAAGGTGGTAATTCTTGAACAATCATCACGGTGTGAAAGGAGAGAAGTTGAAGAAGACGAG 345 0.3826 MSTAAKEYFFKIFSPEKHSETMVIPSSFVKSRGLGRRTIPKDIILRNVSGRVWCVKTRIIGHKIYFGSGWKSFQEENCIRKADFMLFKYDGTNVFKVVILEQSSRCERREVEEDE 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12353g00001 115 CDD B3_DNA 8 100 IPR003340 GO:0003677
Vium12353g00001 115 PANTHER B3 DOMAIN-CONTAINING 5 109 - -
Vium12353g00001 115 Pfam B3 DNA binding domain 9 100 IPR003340 GO:0003677
Vium12353g00001 115 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Vium12353g00001 115 SMART B3_2 9 103 IPR003340 GO:0003677
Vium12353g00001 115 Gene3D - 1 106 IPR015300 -
Vium12353g00001 115 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12353g00001 Vium-Chr12353 14 520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12353g00001 9 100 B3 DNA Binding Superfamily AT5G66980 35.417 3.93e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium12353g00001 B3 4.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12353g00001 - - vum:124821314 236.884