Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1234g00001 TTTTTGCTTCAGCAACTTTTCAATGAAGGAGGCAGGTTCTTTTGGATACATAACACAGGTCCAATTGGATGTTTGCCAAGAAAAAACATGATGAACAAACTCACATCTGAAGACTTGGATTTTGTTGGATGCAGAAAAAATGAGAATGAGATTGCTCAGGAGTTTAACAACCAACTTAAGGACATTGTATTTCAGCTAAGAAAAAACTTCACCAATGCCATCTTCACCTATGTTGATGTCTACTCTGCCAAATATGAACTAATAAAAAATGCAAGGAACCAAGGTAAAGATCCATCAAAGTACATTAGTTGGGATGGTGTGCACTATTCTGAGGCAGCAAACAAATGGCTTTCCACTCTCATTGTGAATGGCTCTTTCTCCCATCCACTACTTGCTACAGGGATGCTTGCTTCTCAATCTCCAAAACATATATTGGG 437 0.3844 FLLQQLFNEGGRFFWIHNTGPIGCLPRKNMMNKLTSEDLDFVGCRKNENEIAQEFNNQLKDIVFQLRKNFTNAIFTYVDVYSAKYELIKNARNQGKDPSKYISWDGVHYSEAANKWLSTLIVNGSFSHPLLATGMLASQSPKHILG 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1234g00001 146 Gene3D SGNH hydrolase 2 125 IPR036514 -
Vium1234g00001 146 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 3 95 - -
Vium1234g00001 146 Pfam GDSL-like Lipase/Acylhydrolase 4 119 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1234g00001 Vium-Chr1234 220 1310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1234g00001 2 122 Pollen Coat Proteome AT1G75910 26.950 4.73e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1234g00001 - - vum:124825471 305.064