Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12349g00002 ATGGCTTTCCACAACCTCAAAATCCATGAACAGTGCACTGTTGCTCCTCCCTCTGCACCCCAAACATCCCTCCCTCTCGTATTCTTCGACCTGTTCTGGCTCAGGTTTCATCCTGTAGAACGCATCTTCTTCTATTCCCTCCCCGTAACCCATTCAAACCCATCCATTTTCTTCACCCAAGTTGTTCCAAAGCTCAAAACTTCACTCTCTCACACCCTCCAACACTTTCCCCCTCTCGCCGGCAACGTCCTGTGGCCCAATGCTTCTTCCAACCCCGTCGTTCAGTACACCCCAGGCGACGCTGTTTCAGTGGTGCTTGCAGAATCCGAAGCCGATTTCGACCACGCGTTGGACAACGCACCCAAAGAAGCATCAGAGTCACGTTTCTTGGTGCCCCACTTGGAATCCTCTGATTCTCATGCCTCTGTTATGGCTCTCCAAATCACTCTGTTCCCTAACAGAGGGTTCGCCATAGGAATCACCACTCACCACGCCGTCCTTGACGGAAAATCTTTAACTCTTTTCATCAAAGCTTGGGCTTCTCTGTGTAAAACCATAGCAATCAGCACTCATGGTTCCTTTTAG 585 0.5026 MAFHNLKIHEQCTVAPPSAPQTSLPLVFFDLFWLRFHPVERIFFYSLPVTHSNPSIFFTQVVPKLKTSLSHTLQHFPPLAGNVLWPNASSNPVVQYTPGDAVSVVLAESEADFDHALDNAPKEASESRFLVPHLESSDSHASVMALQITLFPNRGFAIGITTHHAVLDGKSLTLFIKAWASLCKTIAISTHGSF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12349g00002 194 SUPERFAMILY CoA-dependent acyltransferases 62 185 - -
Vium12349g00002 194 Pfam Transferase family 18 184 - -
Vium12349g00002 194 Gene3D - 2 192 IPR023213 -
Vium12349g00002 194 PANTHER - 6 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12349g00002 Vium-Chr12349 14351 14976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12349g00002 5 189 Monolignol Biosynthesis Gene Families AT5G48930 28.191 8.30e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12349g00002 - - vum:124821312 397.512