Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12349g00001 ATGGCTTCCCACAACCTCAAAATCCATGAAAAGTGCACTGTTGCTCCTCCCTCTGCACCCCAAACATCCCTCCCTCTCGTATTCTTCGACCTGATCTGGATCAGGATTCATCCTGTAGAACGCATCTTCTTCTATTCCCTCCCCGTAACCCATTCAAGCCCATCCATTTTCTTCACCCAAGTTGTTCCAAAGCTCAAAACTTCACTCTCTCACACCCTCCAACACTTTCCCCCTCTCGCCGGCAACGTCTTGTGGCCCAATGTTTCTTCCTACCCTGTCGTTCAGTACACCCCAGGCGACGCTGTTTCAGTGGTGCTTGCAGAATCCGAAGCCGATTTCGACCACGCGTTGGATAACGCACCCAAAGAAGCCTCAGAATCACGTTGCTTGGTGCCCCACTTAGAATCCTCTGATTCTCATGCCTCTATTATGGCTCTCCAAATCACTCTGTTCCCTAACAGAGGGTTCGCCCTAGGAATCAGCACTCACCACGCCATCCTTGACGGAAAATCTTCAACTCTTTTCATCAAAGCTTGGGCTTCTCTGTGTAAAACAAATGATGATGACTCTGTGTCGTCACCATCTTTGGCTCCAGAATTGGAGCCTTTCTTTGACAGAACAGTCATAAAAAACCCGAGTGGGTTAGGGGTAGACGAATCACTCGAGTATGCTCAGCGCTTAACCAAAAGGTTCCCAGGTGAAAACAGCGACAAAAGATGCTTGAAGCTTCTACCTTTTCGTCCAAGATTGGAGGATCATGTTCGAGGGACATTCGAGCTGACGGGAGCAGATTTGGAGAGATTAAAGAATAGGGTGCTGTCCAAGTGGGACAGCGTAGACATAATTGAAGCAGAATCAAACTCAAACTCAACGGTTTTTTCAAAACCAACCAGACTGTCGACTTTTGTTCTAACCTGCGCATATACTGTGGTTTGTATTGCAAAGGCCATGCACGGAGTTGAAAAGGAGAAAAATAAGTTTGGTTGGGGGTTCACCGTGGATTGCAGGGCCAGGATGGAACCTCCAATTCCTGAAAACTACTTTGGGAACTGTTTAATGGGGAGTTTGGCGGATGTTAAGCCATCGGCATTTATAGAGAAGGAAGGGTTTGTTATTATTGCGAAAAGTATTCATAATAAAATAAAAGAGATATCAGATAATGGTGTTTTTCATAAAGGAGATGAAACTGGTCGTAGATATGCAGCTTTGGCACAAGAGAGAGCTGAAATATTAGGAACTTCGGGGTCTAACCGTTTTGGGGTTTATCAGTTTGATTTTGGTTGGGGAAAGCCTTCAAAGGTGGAGATAACATCGGTGGATAGAGCCCTAACAATTGGATTGGCAGACCACAGAAATGCGAAAGGCGGTGTTGAAATTGGGATTGTTCTGAAGAGACCAGTGATGGAATTATTTGGCACTTTGTTTCGTGGAGGATTGTCAGATGAGTGA 1449 0.4569 MASHNLKIHEKCTVAPPSAPQTSLPLVFFDLIWIRIHPVERIFFYSLPVTHSSPSIFFTQVVPKLKTSLSHTLQHFPPLAGNVLWPNVSSYPVVQYTPGDAVSVVLAESEADFDHALDNAPKEASESRCLVPHLESSDSHASIMALQITLFPNRGFALGISTHHAILDGKSSTLFIKAWASLCKTNDDDSVSSPSLAPELEPFFDRTVIKNPSGLGVDESLEYAQRLTKRFPGENSDKRCLKLLPFRPRLEDHVRGTFELTGADLERLKNRVLSKWDSVDIIEAESNSNSTVFSKPTRLSTFVLTCAYTVVCIAKAMHGVEKEKNKFGWGFTVDCRARMEPPIPENYFGNCLMGSLADVKPSAFIEKEGFVIIAKSIHNKIKEISDNGVFHKGDETGRRYAALAQERAEILGTSGSNRFGVYQFDFGWGKPSKVEITSVDRALTIGLADHRNAKGGVEIGIVLKRPVMELFGTLFRGGLSDE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12349g00001 482 SUPERFAMILY CoA-dependent acyltransferases 293 447 - -
Vium12349g00001 482 Pfam Transferase family 8 471 - -
Vium12349g00001 482 Gene3D - 249 481 IPR023213 -
Vium12349g00001 482 Gene3D - 6 228 IPR023213 -
Vium12349g00001 482 PANTHER - 6 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12349g00001 Vium-Chr12349 3264 4927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12349g00001 6 471 Monolignol Biosynthesis Gene Families AT5G48930 23.640 4.39e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12349g00001 - - gmx:100815354 691.034