Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12332g00002 ATGTCGATGCTGCTGAGGAAGGCCTGGGATATGGTGTTGTGGAGATCTGACACATCAATGTCAGCATCATCATCGTCGTCGTCGTCGTCATCATCAACGACAACTGCAACAAGATTTTCACTTGAAGTGGCACATTCTGACATGGGTGAATTGGAGCAGCTACCCAGTGATATCTTGATGCAAATTCTGAAGCTTTTGGGTCCAAAAGCGGTTGCAAAATTGAGTGTGGTTTGCAAGAGTTTGAGATCCATCGCGTCTGATAACAGACTTTGGATATACTTCCTTCAGACCCATCAGGCTGAACCTTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGTTCTGGCTACCCTCTTCCAGCATATGTTGGCCACTGGCCCCAGCTATCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTTCTATTATTATTGATGGTGGTTCTGGCTACTGCAAATTTGGCTGGAGCAAATACGAATGTCCATCTGGTCGATCAGCAACATTTTTGGAGTTTGGTAACATTGAGTCTCCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCAAATAAACAACCAGTTATTGTTTCGGTACCAATATGTCATTATGAAGATACTCAATCAGCAAAAGCTTCAAGACAACAGCTAAAAGAGGCAATCTACGCATCTTTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCCACTCTAGCTCTGTACGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACTTCTATTGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTCGTGGGGCTGGGAGCACTGAAGCTTACAGGATTTCTCAGGGAGAAGATGCAGTTGAATAACTTAACTTTTCAATCTTTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATCAAAGGATACAAACGCGTCATATGAGGCTGCAGGAGAAGGATGGTTTACCCTCTCAAAAGAGAGGTTTCAGACAGCAGAGGTCTTATTCAAGCCTCATTTTGCTGGAGTGCAAGCCATGGGTCTGCACCAAGCAATAGCTCTTTGTGTGGAACATTGCCATTTTGCAGATTTACCAGGTGACAATGATTGGTACAAGACTATAGTTTTATCAGGGGGGACTGCATGCCTACCTGGTTTGGCTGAAAGGGTAGAGAAAGAACTCCATACCTTACTTCCTCCCTACATGTTCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACGCCATGGTTTGGAGCTAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGTGTCACAAAAAAGCAGTTCCGTCAGAAGCCCAGACTCAGCCTCATATGGTGA 1452 0.436 MSMLLRKAWDMVLWRSDTSMSASSSSSSSSSSTTTATRFSLEVAHSDMGELEQLPSDILMQILKLLGPKAVAKLSVVCKSLRSIASDNRLWIYFLQTHQAEPSGDSVFFAETTLSSGYPLPAYVGHWPQLSFKHIYGQRAQVPGSIIIDGGSGYCKFGWSKYECPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYEDTQSAKASRQQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLTFQSLYTVRTLKEKLCYVALDYEAELSKDTNASYEAAGEGWFTLSKERFQTAEVLFKPHFAGVQAMGLHQAIALCVEHCHFADLPGDNDWYKTIVLSGGTACLPGLAERVEKELHTLLPPYMFNGIRVIPPPYGADTPWFGAKIIGNLSTFPGHWCVTKKQFRQKPRLSLIW 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12332g00002 483 SUPERFAMILY Actin-like ATPase domain 145 265 IPR043129 -
Vium12332g00002 483 Gene3D - 188 475 - -
Vium12332g00002 483 Pfam F-box domain 52 92 IPR001810 GO:0005515
Vium12332g00002 483 Gene3D - 41 140 - -
Vium12332g00002 483 SMART actin_3 143 473 IPR004000 -
Vium12332g00002 483 SUPERFAMILY F-box domain 46 102 IPR036047 GO:0005515
Vium12332g00002 483 SUPERFAMILY Actin-like ATPase domain 259 474 IPR043129 -
Vium12332g00002 483 ProSiteProfiles F-box domain profile. 48 94 IPR001810 GO:0005515
Vium12332g00002 483 SMART fbox_2 54 94 IPR001810 GO:0005515
Vium12332g00002 483 Pfam Actin 192 474 IPR004000 -
Vium12332g00002 483 Gene3D Actin; Chain A, domain 4 293 376 - -
Vium12332g00002 483 PANTHER ACTIN 187 475 IPR004000 -
Vium12332g00002 483 CDD NBD_sugar-kinase_HSP70_actin 146 290 - -
Vium12332g00002 483 Gene3D - 250 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12332g00002 Vium-Chr12332 9773 18213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12332g00002 192 475 Cytoskeleton Gene Families AT3G12110 33.904 3.61e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12332g00002 K16616 - gmx:100791973 851.277