Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12331g00002 ATGCCTGCCCTCATCGATCTTAACAGCGCCACCGAGGACCATGAAACGCCATCGTCTCGCCCCTCCTCCGTCTGCCTCGAACTCTGGCATGCCTGCGCGGGTCCTATGATTTCCTTGCCCAAGAAAGGAACACTTGTCGTGTACTTCCCTCAAGGACACTTAGAACAACACCTTCACGATTTTCCGCTTCCTGCTTCTGCTAACATCCCTTCCCACCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTGGTGTTGGCTCCTAAAAGTGAGCAACTGCATCAGAAGTTTCGGGAAGCGGAAATTGATGTTGATGGTGAGGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACCCACGGTGGATTTTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGAATACAGTCAACAGAGACCTTCGCAGGAGCTTGTGGCAAAGGATCTGCATGGTCAAGAATGGAGGTTTCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGCGAGGATGGAGAACTAAGATTGGGAATTCGTAGGGCTGCTCAATTAAAAAGTGGCAGTGCAATTTCAACTTTTGCTGCCGAGCAATTGAATCTTAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAGACGTGCCTTTAGTGTGCACTATAATCCAAGGGTCAGCTCATCTGAGTTCATTATACCAATTAAGAAATTCTTGAGGAGCCTTGATTATTCTTATTCAGTTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGAGGCAGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTATAA 1032 0.4748 MPALIDLNSATEDHETPSSRPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLAPKSEQLHQKFREAEIDVDGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLEYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSAISTFAAEQLNLSSLLDVVNALSARRAFSVHYNPRVSSSEFIIPIKKFLRSLDYSYSVGTRFRMRFETEEAAERRFTGLIVGITDVDPVRWPGSKWRCLMV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12331g00002 343 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Vium12331g00002 343 Coils Coil 101 121 - -
Vium12331g00002 343 Gene3D - 297 343 - -
Vium12331g00002 343 FunFam Auxin response factor 132 236 - -
Vium12331g00002 343 SUPERFAMILY DNA-binding pseudobarrel domain 126 247 IPR015300 -
Vium12331g00002 343 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium12331g00002 343 CDD B3_DNA 132 234 IPR003340 GO:0003677
Vium12331g00002 343 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Vium12331g00002 343 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 343 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium12331g00002 343 Gene3D - 132 236 IPR015300 -
Vium12331g00002 343 SMART B3_2 134 236 IPR003340 GO:0003677
Vium12331g00002 343 FunFam Auxin response factor 297 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12331g00002 Vium-Chr12331 2649 6042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12331g00002 22 343 B3 DNA Binding Superfamily AT5G60450 58.359 5.58e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium12331g00002 B3 2.7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12331g00002 K14486 - gmx:100796970 598.201