Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12331g00001 ATGCCTGCCCTCATCGATCTTAACAGCGCCACCGAGGACCATGAAACGCCATCGTCTCGCCCCTCCTCCGTCTGCCTCGAACTCTGGCATGCCTGCGCGGGTCCTATGATTTCCTTGCCCAAGAAAGGAACACTTGTCGTGTACTTCCCTCAAGGACACTTAGAACAACACCTTCACGATTTTCCGCTTCCTGCTTCTGCTAACATCCCTTCCCACCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTGGTGTTGGCTCCTAAAAGTGAGCAACTGCATCAGAAGTTTCGGGAAGCGGAAATTGATGTTGATGGTGAGGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACCCACGGTGGATTTTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGAATACAGTCAACAGAGACCTTCGCAGGAGCTTGTGGCAAAGGATCTGCATGGTCAAGAATGGAGGTTTCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGCGAGGATGGAGAACTAAGATTGGGAATTCGTAGGGCTGCTCAATTAAAAAGTGGCAGTGCAATTTCAACTTTTGCTGCCGAGCAATTGAATCTTAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAGACGTGCCTTTAGTGTGCACTATAATCCAAGCTCATCTGAGTTCATTATACCAATTAAGAAATTCTTGAGGAGCCTTGATTATTCTTATTCAGTTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGAGGCAGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTATAA 1026 0.4737 MPALIDLNSATEDHETPSSRPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLAPKSEQLHQKFREAEIDVDGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLEYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSAISTFAAEQLNLSSLLDVVNALSARRAFSVHYNPSSSEFIIPIKKFLRSLDYSYSVGTRFRMRFETEEAAERRFTGLIVGITDVDPVRWPGSKWRCLMV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12331g00001 341 Pfam Auxin response factor 261 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium12331g00001 341 Coils Coil 101 121 - -
Vium12331g00001 341 FunFam Auxin response factor 132 236 - -
Vium12331g00001 341 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Vium12331g00001 341 SUPERFAMILY DNA-binding pseudobarrel domain 126 247 IPR015300 -
Vium12331g00001 341 CDD B3_DNA 132 234 IPR003340 GO:0003677
Vium12331g00001 341 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Vium12331g00001 341 Gene3D - 295 341 - -
Vium12331g00001 341 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 341 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium12331g00001 341 FunFam Auxin response factor 295 341 - -
Vium12331g00001 341 SMART B3_2 134 236 IPR003340 GO:0003677
Vium12331g00001 341 Gene3D - 132 236 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12331g00001 Vium-Chr12331 2644 6083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12331g00001 22 341 B3 DNA Binding Superfamily AT5G60450 58.055 2.51e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium12331g00001 B3 2.7e-23 CL0405