Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12326g00001 ATGGAAAAACAGAAAATGGGTGTGTTAAGGGCTGCAATTGGAGATGCAATTCTGACATCAACGTGGGTTTTCATCATCTCAACTTTGAGAATTGCTTCAACGGAGGTAGCACTTTTCCTCAGCCTCCAACCATTTTCATTTGCAGGTCTCTTCATCACCACAGTTTTGAACACCCTCTATGTGCTCACCATAAGCTTCATTGGAAGCGTGTTAGGCGGTGCCAGCTTCAACCCTTCAACCACAGTTTCATTCTACACTGCAGGTCTCAGACCTGATTCATCTCTTGCATCAATGGCTGTTAGGTTCCCTGCTCAGGCATTTGGTGGGGCTGTTGGAGCCAAGGCTCTTCTTCTTGTTATGCCATCACAGTACAAGCAGATGCTGAAAGGTCCTTTTTTGAAGGTGGACTTGCACACTGGTGCCATTGCTGAGGGGTTCTTGACCTTCACTCATAACATGGCTATTCTCTTTGTGATGCTGAGGGGTCCCAAGAACCCTTTTTTGAAGGTCTATTTGCTTTCTGTTGCTACTGTTGCTTTGGTTATCCCTGGTGCTGGGTTCACTGGCCCTTCCATGAACCCTGCCAATGCCTTTGGATGGGCCTTTGTCAACAACAAGCACAACACCTGGGAGCAGTTTTATGTCTATTGGGTATGCCCTTTCGTAGGAGCATCCTCTGCTGCTTTCATCTTCAGGTCTCTATTTATGGCACCAATCAAGCACAAGAAGGCTTGA 735 0.468 MEKQKMGVLRAAIGDAILTSTWVFIISTLRIASTEVALFLSLQPFSFAGLFITTVLNTLYVLTISFIGSVLGGASFNPSTTVSFYTAGLRPDSSLASMAVRFPAQAFGGAVGAKALLLVMPSQYKQMLKGPFLKVDLHTGAIAEGFLTFTHNMAILFVMLRGPKNPFLKVYLLSVATVALVIPGAGFTGPSMNPANAFGWAFVNNKHNTWEQFYVYWVCPFVGASSAAFIFRSLFMAPIKHKKA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12326g00001 244 SUPERFAMILY Aquaporin-like 5 239 IPR023271 -
Vium12326g00001 244 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12326g00001 244 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12326g00001 244 PRINTS Major intrinsic protein family signature 57 81 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12326g00001 244 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12326g00001 244 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Vium12326g00001 244 Pfam Major intrinsic protein 4 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium12326g00001 244 PANTHER AQUAPORIN SIP1-1 6 243 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12326g00001 Vium-Chr12326 9422 10285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12326g00001 6 235 Major Intrinsic Protein MIP AT3G04090 46.957 3.73e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12326g00001 K09875 - gmx:100797126 400.593