Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1231g00018 ATGTGCGGAATCCTTGCAGTGTTGGGTTGCGTCGACAACTCTCAGGCCAAGCGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGGCATAGAGGTCCTGATTGGAGTGGCATACATTGCCATGATGATTGTTACCTTGCTCATCAAAGGCTTGCTATTGTTGATCCTACTTCAGGGGATCAACCTTTGTACAACGAAGACAAGACTGTTATTGTCACCGTAAATGGGGAGATATACAACCACAAACAATTGAGACAGAAACTGAGTTCTCATAAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTTATGAAGAGTATGGGGAGGAATTTGTTAACATGCTGGATGGGATGTTCGCCTTTATTCTTCTTGATACTCGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGCTGGGGTCTTGATGGATCAACATGGTTTGCATCTGAAATGAAAGCTCTGAGTGATGATTGTGAGAGATTCATGTCATTTCCTCCAGGGCATATATATTCCAGCAAACAAGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTTTCGGAGATTGTTCCATCAACTCCCTATGATCCAATACTTTTGCGTGAGACCTTCGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGAGTTCTTTTGTCCGGAGGATTGGATTCATCACTTGTTGCCTCTGTGGTCAATCGATATTTAGCGGAATCAGAGGCGGCTCGTCAATGGGGATCACAGTTGCATACTTTCTGCATTGGTTTAAAGGGCTCTCCGGACTTGAAAGCTGCAAAAGAGGTAGCAGATTATCTTGGTACTCGTCACCATGAACTTTATTTCACGGTTCAGGAAGGTATAGATGCACTTGAAGAAGTCATTTACCATATTGAAACATATGACGTAACGACTATCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGGAAAATTAAAGCCTTGGGAGTGAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTTCATAAGGCACCTAACAAGAAAGAGCTTCACGAAGAAACTTGTCGAAAAATTAAAGCTCTTCATCTTTATGACTGCCTGAGAGCCAATAAGTCAACTGCAGCATGGGGAGTAGAGGCCCGTGTACCATTCTTGGATAAAGAATTTATCGAAGTAGCAATGAGTATGGATCCGGAGTGGAAAATGATAAGGCGTGATCTTGGAAGGATAGAGAAGTGGGTATTACGCAATGCATTTGATGATGAAAAGAATCCATATTTACCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGTGACGGGGTTGGTTACAGTTGGATTGATGCCTTGAAGGATCACGCTGATAAACAAGTCCCAGATGCAACAATGCTTGCTGCCAGTTTTATTTACCCTGAAAACACTCCTACCACCAAAGAAGGATACCTCTACAGGACAATTTTTGAGAAGTTCTTTCCGAAGAATGCAGCAAGGGCAACAGTTCCAGGGGGTCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCGGCATGGTCTAAAAATCTTGACCCTTCTGGTCGTGCCGCGCTTGGTGTTCATGAAGCTTCATATGATGCAGTGGATACCAAAGTTCACAAACCCAAAAATGGACCACTTTAG 1710 0.4322 MCGILAVLGCVDNSQAKRARIIELSRRLRHRGPDWSGIHCHDDCYLAHQRLAIVDPTSGDQPLYNEDKTVIVTVNGEIYNHKQLRQKLSSHKFRTGSDCEVIAHLYEEYGEEFVNMLDGMFAFILLDTRDKSFIAARDAIGITPLYLGWGLDGSTWFASEMKALSDDCERFMSFPPGHIYSSKQGGLRRWYNPPWFSEIVPSTPYDPILLRETFERAVVKRMMTDVPFGVLLSGGLDSSLVASVVNRYLAESEAARQWGSQLHTFCIGLKGSPDLKAAKEVADYLGTRHHELYFTVQEGIDALEEVIYHIETYDVTTIRASTPMFLMSRKIKALGVKMVLSGEGSDEIFGGYLYFHKAPNKKELHEETCRKIKALHLYDCLRANKSTAAWGVEARVPFLDKEFIEVAMSMDPEWKMIRRDLGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDALKDHADKQVPDATMLAASFIYPENTPTTKEGYLYRTIFEKFFPKNAARATVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHEASYDAVDTKVHKPKNGPL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1231g00018 569 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 209 484 - -
Vium1231g00018 569 PIRSF Asn_synthetase_glu-h 356 516 IPR006426 GO:0004066|GO:0006529
Vium1231g00018 569 PIRSF Asn_synthetase_glu-h 1 363 IPR006426 GO:0004066|GO:0006529
Vium1231g00018 569 Gene3D HUPs 197 514 IPR014729 -
Vium1231g00018 569 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 192 IPR029055 -
Vium1231g00018 569 NCBIfam asparagine synthase (glutamine-hydrolyzing) 2 366 IPR006426 GO:0004066|GO:0006529
Vium1231g00018 569 FunFam Asparagine synthetase [glutamine-hydrolyzing] 195 514 - -
Vium1231g00018 569 Pfam Glutamine amidotransferase domain 48 165 IPR017932 -
Vium1231g00018 569 FunFam Asparagine synthetase [glutamine-hydrolyzing] 2 192 - -
Vium1231g00018 569 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 185 IPR017932 -
Vium1231g00018 569 Pfam Asparagine synthase 210 361 IPR001962 GO:0004066|GO:0006529
Vium1231g00018 569 PANTHER ASPARAGINE SYNTHETASE 1 554 - -
Vium1231g00018 569 CDD Asn_Synthase_B_C 211 456 IPR001962 GO:0004066|GO:0006529
Vium1231g00018 569 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 195 IPR029055 -
Vium1231g00018 569 CDD AsnB 2 192 IPR033738 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1231g00018 Vium-Chr1231 151717 157461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1231g00018 2 164 PRT Gene Family AT4G38880 25.728 2.00e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1231g00018 K01953 - gmx:732660 1116.68