Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1231g00014 ATGCCCAATTCCAACTCCAACCCAAACGCAGATCCGACCCTAAATTTTAACACCCAGGATCCGAATGTAACTGCTAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGGCAAGAATTGATTCTCTGCAGCACTTCCTATCTCAATCCATCAGCACCAGCACTCCTCTCACCACCGATCAAATTGCTATGGTCTCCACCCACATCATCTCATCCATCCACCAAATCATCGTCAACGGTGCCGCCCTCGTAACTTACTCCCAACATTCCACCGCCGCGGTCACACCAGATGCGTCGTCGTATCCGAAGCCGGAACCCTCGGCCACCGATAAACACAAGCAACTCCTCGATTCCAAACTCGAACCTCCCGAGGACGGTGACGGCGTCGAAGACGACGATGGCGAAATCGTGGAGCTCGACGCCGTGGAACTCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGATTCCGGCGCGACGCGAATCTCCGCATGCACATGCGAGCGCACGGAGATCAATTCAAGACGCCGGAGGCACTGGCGAGGCCGTCAGAAACCGGCTCGGCGAAGGGCGCGATGCGGTTCTCTTGTCTGTTCGAAGGCTGCAACCGGAACAAACTACACCAGCGGTTTCGGCCGCTGAAGTCGGCGTTGTGCTTGAAGAACCACTTCAAGCGCAGCCACTGTCCAAAGATGTACTCGTGCACCCGGTGCCACAAGAAGCACTTCTCGGTGCTTTCGGATTTGAAAAGCCACGTGAAGCACTGCGGAGAGTGCCGGTGGAAGTGCACGTGCGGGACCAGGTTCTCGAGGAAGGACAAGTTGTTCAGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGATAAAAGGAAGCAAGTGTCGGAGGGTGATGACGAAAATCCAATGTTGACGACTGACAGTGGATTTGAATTGGATAACTGCTTTGGGGATGAGGAGTTGCCGGAAGGGTTTTTCGATGATTTTGGGTCCATTGACGACTACAGTTTAGAGGAAGTGTTAGGGTTTCTGAGTAATTGA 1068 0.5487 MPNSNSNPNADPTLNFNTQDPNVTANPQLPLQNLSQVRARIDSLQHFLSQSISTSTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHSTAAVTPDASSYPKPEPSATDKHKQLLDSKLEPPEDGDGVEDDDGEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSETGSAKGAMRFSCLFEGCNRNKLHQRFRPLKSALCLKNHFKRSHCPKMYSCTRCHKKHFSVLSDLKSHVKHCGECRWKCTCGTRFSRKDKLFSHIALFEGHAPALACDEEDKRKQVSEGDDENPMLTTDSGFELDNCFGDEELPEGFFDDFGSIDDYSLEEVLGFLSN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1231g00014 355 MobiDBLite consensus disorder prediction 1 26 - -
Vium1231g00014 355 FunFam Zinc finger 45-like 148 174 - -
Vium1231g00014 355 Gene3D Classic Zinc Finger 224 292 - -
Vium1231g00014 355 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Vium1231g00014 355 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Vium1231g00014 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Vium1231g00014 355 SMART c2h2final6 198 231 IPR013087 -
Vium1231g00014 355 SMART c2h2final6 236 258 IPR013087 -
Vium1231g00014 355 SMART c2h2final6 260 288 IPR013087 -
Vium1231g00014 355 SMART c2h2final6 151 173 IPR013087 -
Vium1231g00014 355 Gene3D Classic Zinc Finger 151 174 - -
Vium1231g00014 355 MobiDBLite consensus disorder prediction 107 124 - -
Vium1231g00014 355 MobiDBLite consensus disorder prediction 95 133 - -
Vium1231g00014 355 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 113 307 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1231g00014 Vium-Chr1231 114161 115460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1231g00014 125 321 C2H2 Transcription Factor Family AT1G34370 52.404 3.41e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1231g00014 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1231g00014 - - gmx:100796506 511.916