Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1231g00013 ATGGTTGATGAGAGTGGAAAAATGGATTTGGTATTTGTTCTTTTGCTATTCACTAGTGTGTGCTTTTCTGCGTTGGCTGGGCTTGATTCACAAGAAGATGCGCTGTATGCGTTGAAGTCATCATTGAATGCTTCTACGAGCCAGCTTACAAACTGGAATAAAAATCTAGTTGACCCTTGTACTTGGTCCAATGTTGAATGTGACCAAAATAACAACGTTATTCGAGTTTCACTAGAATTTATGGGATTCACAGGATCGTTGACACCAAGAATAGCATCTCTGAAAAGTCTTGAAACTCTTTCTTTGCAAGGTAATAACATCACTGGTGACATTCCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTAGATTTGGAAAACAACAAATTAACTGGTGAAATTCCCTATTCACTTGGTAATCTTAGAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTTAGTGGAACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTTAGTGGGAAGATTCCGGAGCGGTTGTTCAGCATTCCTACATACAATTTCACTGGAAATAATTTGAATTGTGGAGTGAGTTATCATCATCTTTGCTCATCTGATAATGCAGTTCAAGGTTCGTCTCATAAAACAAAAGTAGGCCTCATAGTTGGAATAGTTGCAGGTTTAGGTATTATTTTTTTTCTTGGTTGTCTGCTGTTCTTCTGGTACAAGGGGTGCAAGCGTGAAATTTTTGTTGATGTTCCAGGCGAGGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAGCTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATTTTAGGACAGGGAGGCTTTGGAAAGGTTTACAAAGGTATTCTAGCAGATGGTACAAAAGTTGCTGTCAAAAGGTTAACCGATTATAAAAGTGCTGCGGGTGATGCTGCGTTTCAGCGTGAAGTGGAGTTGATAAGCGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGTTTTTGTACTACTACAACTGAACGTCTCTTAGTTTATCCCTTCATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAGACCTGGGGAACCCGTTTTGGATTGGCCTACTAGAAAACGAGTGGCTCTAGGAACAGCCCGCGGCCTAGAATATCTTCACGAGCAGTGTAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAACCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGATGTCCGAAATACTACTGTGACAACTCAAGTTCGTGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACGGGAAAATCTTCAGAAAGGACTGATATTTTTGGTTATGGGATTATGCTTTTGGAACTTGTTACAGGTCAACGTGCTATTGACTTTTCACGTTTGGAAGAGGAGGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGACTAGATGTTATTGTGGACTGCAACCTGAAGAAAAATTACATAATAGGAGAGGTTGAAATGATTGTACAAATTGCATTACTCTGCACACAACCATCTCCGGAAGATCGACCAGCAATGTCAGAAGTTGTAAGAATGTTAGAGGGAGAAGGGCTTGCTGAAAGATGGGAAGAATGGCAGCATGTGGAGGTTGCTACGAGGCAAGATTACGAGAGACTACAGAGAAGAATGAACTGGGGAGAAGATTCAATGAATAACCAAGATGCCATTGAGTTGTCAGGTGGAAGATAA 1836 0.402 MVDESGKMDLVFVLLLFTSVCFSALAGLDSQEDALYALKSSLNASTSQLTNWNKNLVDPCTWSNVECDQNNNVIRVSLEFMGFTGSLTPRIASLKSLETLSLQGNNITGDIPKEFGNLTSLVRLDLENNKLTGEIPYSLGNLRKLQFLTLSQNNLSGTIPESLASLPSLINVMLDSNDLSGKIPERLFSIPTYNFTGNNLNCGVSYHHLCSSDNAVQGSSHKTKVGLIVGIVAGLGIIFFLGCLLFFWYKGCKREIFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGILADGTKVAVKRLTDYKSAAGDAAFQREVELISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYRLRELRPGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEPVVGDFGLAKLVDVRNTTVTTQVRGTMGHIAPEYLSTGKSSERTDIFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDVIVDCNLKKNYIIGEVEMIVQIALLCTQPSPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVATRQDYERLQRRMNWGEDSMNNQDAIELSGGR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1231g00013 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 573 - -
Vium1231g00013 611 SUPERFAMILY Protein kinase-like (PK-like) 267 563 IPR011009 -
Vium1231g00013 611 Pfam Protein kinase domain 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1231g00013 611 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
Vium1231g00013 611 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Vium1231g00013 611 Gene3D Ribonuclease Inhibitor 27 226 IPR032675 -
Vium1231g00013 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Vium1231g00013 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Vium1231g00013 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Vium1231g00013 611 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 212 - -
Vium1231g00013 611 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1231g00013 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Vium1231g00013 611 SUPERFAMILY L domain-like 30 201 - -
Vium1231g00013 611 ProSiteProfiles Protein kinase domain profile. 288 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1231g00013 611 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vium1231g00013 611 Pfam Leucine rich repeat 93 131 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1231g00013 Vium-Chr1231 95224 102098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1231g00013 7 611 Receptor kinase-like Gene Family AT5G10290 71.429 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium1231g00013 Pkinase 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1231g00013 - - gmx:100786654 1063.52