Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1231g00012 ATGGCCATTTCTACTTTTGCCAGTACTGCAGCTACTCAATGGGGAATTCGTCCTCAGATTTTTGCGGGATCGACAGTGGGGAGGATTGCATCATTCAAGAATATTGTTTCAAGCAAGCTAAGCTTCATGGCTGCCCCAAATTCAAGCTTCTGTTCTCGAGATTCCTCGCGTGCTCTTTTTGACAAAGTTTCTTTGCAGAAATTACATGGTCGCAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGATTACTATTCTATCCTTGGGGTCTCAAAAAATTCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTTAACAAAGAACCTGAAGCAGAAAAGAAATTTAAAGAAATTAGTAATGCATACGAGGTCTTGTCAGATGATGAGAAAAGATCCATATATGATACATATGGAGAGGCTGGTCTTAAAGGTTCAGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGTATGGGTGGCATGGGGGGCAGTAGAAGTTCTTGGAATGGAGCAGTTGAGGGTGAAGACGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCTGTTTTTGGGGTGGAAAAGGAGATTGAGATTCGACGATTAGAGAACTGTGGAACTTGCAATGGTTCGGGAGCTAAACCAGGGACCAAATCATCTAAGTGTAACACTTGTGGTGGTCAGGGTCGGGTTGTTCAATCGACGAGGACTCCATTAGGCATCTTTCAGCAGTCTATGACTTGCTCTTCTTGCAATGGAGCTGGTGAAATTTCAACACCTTGCAATACATGTTCTGGGGAAGGACGGGTGAGGAAGACAAAGCGGATAAGTATCAAGGTTCCTGCTGGTGTGGATTCTGGAAGCCGGTTAAGGGTCCGCAATGAAGGTAATGCTGGAAGGCGTGGGGGTCCTTCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCGGTGCTTAAACGGGATGACACAAACATTTTATACACATGTAAAATATCTTACATTGATGCAATCTTGGGGACTACTGTTAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCAGCTGGGACTCAACCAAGCTCAACACTTGTTATGAGTAAGAAAGGTGTTCCCCTGCTGAACAAGAAGAATATGAGGGGTGATCAATTGGTCAGGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGATGAGAGGAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGACTGCTGCCACCAGTGGTAGGAGATAA 1323 0.4376 MAISTFASTAATQWGIRPQIFAGSTVGRIASFKNIVSSKLSFMAAPNSSFCSRDSSRALFDKVSLQKLHGRRGSRLIVRADADYYSILGVSKNSSKSEIKSAYRKLARSYHPDVNKEPEAEKKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGSRSSWNGAVEGEDEYYSLVLNFKEAVFGVEKEIEIRRLENCGTCNGSGAKPGTKSSKCNTCGGQGRVVQSTRTPLGIFQQSMTCSSCNGAGEISTPCNTCSGEGRVRKTKRISIKVPAGVDSGSRLRVRNEGNAGRRGGPSGDLFVVLEVIPDPVLKRDDTNILYTCKISYIDAILGTTVKVPTVDGMVDLKIPAGTQPSSTLVMSKKGVPLLNKKNMRGDQLVRVQVEIPKKLSKDERKLIEELADLSKGKTAATSGRR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1231g00012 440 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Vium1231g00012 440 SMART dnaj_3 82 139 IPR001623 -
Vium1231g00012 440 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 46 434 - -
Vium1231g00012 440 Gene3D - 221 284 - -
Vium1231g00012 440 FunFam Putative Mitochondrial DnaJ chaperone 275 326 - -
Vium1231g00012 440 CDD DnaJ_C 192 414 - -
Vium1231g00012 440 Gene3D DnaJ domain 80 184 IPR036869 -
Vium1231g00012 440 CDD DnaJ 83 136 IPR001623 -
Vium1231g00012 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Vium1231g00012 440 Gene3D - 331 439 - -
Vium1231g00012 440 PRINTS DnaJ domain signature 85 103 IPR001623 -
Vium1231g00012 440 PRINTS DnaJ domain signature 139 158 IPR001623 -
Vium1231g00012 440 PRINTS DnaJ domain signature 119 139 IPR001623 -
Vium1231g00012 440 PRINTS DnaJ domain signature 103 118 IPR001623 -
Vium1231g00012 440 CDD DnaJ_zf 221 284 IPR001305 GO:0031072|GO:0051082
Vium1231g00012 440 SUPERFAMILY Chaperone J-domain 80 180 IPR036869 -
Vium1231g00012 440 Pfam DnaJ C terminal domain 196 411 IPR002939 -
Vium1231g00012 440 Hamap Chaperone protein DnaJ [dnaJ]. 80 434 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium1231g00012 440 NCBIfam molecular chaperone DnaJ 83 427 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium1231g00012 440 Gene3D - 191 326 - -
Vium1231g00012 440 ProSiteProfiles Zinc finger CR-type profile. 208 289 IPR001305 GO:0031072|GO:0051082
Vium1231g00012 440 Pfam DnaJ domain 83 144 IPR001623 -
Vium1231g00012 440 FunFam Chaperone protein dnaJ A6 chloroplastic 80 183 - -
Vium1231g00012 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 343 IPR008971 GO:0006457|GO:0051082
Vium1231g00012 440 ProSiteProfiles dnaJ domain profile. 83 147 IPR001623 -
Vium1231g00012 440 Pfam DnaJ central domain 221 284 IPR001305 GO:0031072|GO:0051082
Vium1231g00012 440 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 288 IPR036410 -
Vium1231g00012 440 FunFam Chaperone protein dnaJ 1, mitochondrial 331 438 - -
Vium1231g00012 440 FunFam Molecular chaperone DnaJ 213 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1231g00012 Vium-Chr1231 83548 88464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1231g00012 84 146 C2H2 Transcription Factor Family AT1G74250 46.377 4.66e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1231g00012 K03686 - gmx:100786143 761.14