Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12315g00009 ATGAAGTGGGGTGGAAAAAAACCTTCTCCTTCTCCTTCTTCCTCTTCTAGGCCTTCTTTTGCATCTCATGTGTCTCCTTTTTCATGGCTTTCCAAGTTCAAGCATATGAGAATAAACTCAGACCCAAAACCTGCCGCACTGAAGCAAAATGCAAAGCAGAATTCAACTCCATCAGATACCTCGCCCCATTATGCTTGTGGGAATAATAGAGGCAGGTTTTATGGAGGGGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTAATGAGCATAGAAAAAGTGATGATATTCTGAAGCCGGTAAAGTACAAATTGGATGCTGAACATGTCATTCCATCCTCGAGTTTCCCCGGTGGATTGAATAATGCTAAAAGACAAGGTAGAAGAGAAGTCACTCAGAAGTTGAAGCAGAAGGACACTGAACTGAGAGAAGAAACAACATTGCTGAATGAAGCTGCAAGGAGTGTAAAAGAACTCGAATCCTTGAGGAGGCGATATGAGAGGAAAGCACAAAGAGTTTTGCAAGAGCAGCTCTTGAAATTGGAAAAGGCAGAAGAGGAATCTCAGTTTGCATCAAGTCCGTTCTTAGAAAATGATGTGCAGCAATATGAGTCACCCAGAACAATTTGCACACCAAGGAAGCATTTGTTTGTCGATTCAAAGAGTTCTGGCCTTGGGTATCTAAGAGAAGCCCGAGTAAGTAGTCCCCAATTGGATTCTGAGTTGCATAATTTGAAACAAACTGAGGAGTTGAAATTGAAAGCAAAGAGTAACCAACAAATGCAATCGCTTCATGTGAGCAGAGAAAACCAGAGGAGGAAACCAAAGCACAACTCCAAGGTTAGAGTACATTCTCCAAGAATGGGTTCCAAAGTTGAAGTCCGAAAAATAAAGGCAATAGAAGAGAAGAAGAAAGCAAAACTGAAGATGAAAAAAGAAGAGGAAATTGTGGAGGAAACAGAAGGGTTAGATAGCTTTGCGGTGGTGAAATGTTCTTTGGATCCACAGAAGGATTTCAGAGATTCAATGATTGAGATGATCACAGAGAAACAGATCAGCCAGCCAGAAGAAATGCAAGATCTGCTAGCATGTTATCTGACTTTGAATTCTAATGAGTACCATGATCTCATCATCCAAGTGTTCAAACAAGTATGGTTGTGCATGAGCCGAGCCAGTTCGGGTATTCAATCACACAAGCAATGCTGTTGTTGTGATTAA 1224 0.415 MKWGGKKPSPSPSSSSRPSFASHVSPFSWLSKFKHMRINSDPKPAALKQNAKQNSTPSDTSPHYACGNNRGRFYGGDDEAFWRLSFGEEGNEHRKSDDILKPVKYKLDAEHVIPSSSFPGGLNNAKRQGRREVTQKLKQKDTELREETTLLNEAARSVKELESLRRRYERKAQRVLQEQLLKLEKAEEESQFASSPFLENDVQQYESPRTICTPRKHLFVDSKSSGLGYLREARVSSPQLDSELHNLKQTEELKLKAKSNQQMQSLHVSRENQRRKPKHNSKVRVHSPRMGSKVEVRKIKAIEEKKKAKLKMKKEEEIVEETEGLDSFAVVKCSLDPQKDFRDSMIEMITEKQISQPEEMQDLLACYLTLNSNEYHDLIIQVFKQVWLCMSRASSGIQSHKQCCCCD 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12315g00009 407 Coils Coil 144 189 - -
Vium12315g00009 407 ProSiteProfiles OVATE domain profile. 330 389 IPR006458 -
Vium12315g00009 407 MobiDBLite consensus disorder prediction 272 286 - -
Vium12315g00009 407 MobiDBLite consensus disorder prediction 1 23 - -
Vium12315g00009 407 NCBIfam uncharacterized plant-specific domain TIGR01568 329 389 IPR006458 -
Vium12315g00009 407 MobiDBLite consensus disorder prediction 256 290 - -
Vium12315g00009 407 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 195 391 IPR038933 GO:0045892
Vium12315g00009 407 MobiDBLite consensus disorder prediction 46 65 - -
Vium12315g00009 407 MobiDBLite consensus disorder prediction 40 70 - -
Vium12315g00009 407 Pfam Transcriptional repressor, ovate 334 390 IPR006458 -
Vium12315g00009 407 Coils Coil 298 325 - -
Vium12315g00009 407 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12315g00009 Vium-Chr12315 97266 98714 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium12315g00009 Ovate 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12315g00009 - - gmx:106798868 580.867