Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12315g00008 ATGGCTTCAGCGGCTATATTTTCGTCGCTTCGACGGCGCCGGTCGCCATCGCTGGAGGCGTTTCTTGTGCCAGTTGACCTCTCTGAGGTGGCGCTGCTGGAGACACTTATCTCCGTCTCCGGAGACGTCGTATCCTGCTTCTCCGACAATCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCGTAGGAAAAGTAGAGATTTTCCGGTCTATGTTAGAGTGCTTGAGAGACTCTGCTGACGGTGGCGTTCTAACCCCCACGGCGGTGCTGTGCTTAAAGGAGCTTTATTTGCTACTGTATCGCTCTAAGATTCTTCTTGATTACTGTGCCCGATCGAGCAAGCTGTGGCTCTTGCTTCAGAACCATTGTGTGTCTGGTCACTTCCATGACTTGTGTCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGAGAGATTGGACTCAGTGATGACGTTAGGGAACAGGTTGAGTTGTTGCAGAGACAGTCCAAAAGGGCTAAGTTGTTCGTAGATAAGAAAGATGACGCCCTTAGGATAAGGTTCTTTTGGTTTCTGAATGAATTTGAAAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTTGATAAGTTGCAGATGCTCGATGCTAAGAGTTGTAGGGTGGAGGTTGAGGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACAGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGTAGGTTTTTGTTATTTGGGTTTGAGGAAGAATTGGAAGTTGAAAGTCAGAAGAGAGCGAGGAAGAGGTTGATTACCCAGGAAATTGCGGAAACGTTTTTTACGGTTCCTAAGGACTTTTGCTGTCCGATAACCTTGGACTTGATGTGTGATCCTGTAATAATTTCTACTGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAGGGGCATTGCACTTGTCCCAAAACTGGGGTACTGCTTTCTCATAACAGGCTTGTTCCTAATCGTGCTCTTAGGAATTTGATTATGCAATGGTGCAGCGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATCCATCAGTTGAGATGTTTGCATCAGCTTGTCCCTCCAAAGCTTCCCTTGTAGCTAACCGAGAGACGGCCATGCTTCTCATTCAGCAGCTTGCTGATGGGTCGCAAGTTGCAAAGACTGTGGCTGCCAGGGAGATAAGATTGCTGGCCAAAAATGGAAAGGAAAACCGTGCCTTCATTGCGCAAGCTGGGGCAATTCCTCATCTTAGGAAGTTGCTTTCCTCTCCTAATGCTGTTGCACAGGAGAATTCTGTGACTGCACTGCTCAATCTGTCCATTTTTGAAAGAAATAAGAGTATGATCGTGGAGGAAGGGTGTTTGGGGTCAATTGTTGAGGTGTTGCAATTCGGGCACACGACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTATCTGCTGTCCACGAGTATAAGAAACAGATTGCGGATAATGTGGGAGCTGTTGAAGCATTGGCATGGTTGTTGCAAGAGGGAACTCAAAGGGGGAAGAAGGATGCTGTCACAGCATTATTTAATCTCTCCACCCATACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCAGTGAAAGCTATGGTCTTGGCTTTGGGGAATGAAGGAGTTTCCGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTATTGGCGCCATGGCAGTTGTGAGGGAGGAAGCAGCAGTAGGTGGATTGATAGGAATTATGCGTTGTGGAACGGCAAGAGGTAAAGAGAATGCAGTTGCAGCTTTGCTGGAGCTGTGCAGGAGTGGTGGTGCAGCGGCAACTGAGAGGGTGGTTAGGGCGCCTGCCTTGGCCGGCTTGCTTCAAACCTTGCTTTTCACAGGGACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTGCATTATGGTGGATTGGGTGTGGGTTATGCATTTGCTAGCGATTCAGCTTCAACCAGGAATACTACAAGCTTTGTGAGTGATGTTTCACTTCCAATGTCCATTTCTGTTCCTGTTTTATGA 2145 0.4816 MASAAIFSSLRRRRSPSLEAFLVPVDLSEVALLETLISVSGDVVSCFSDNRFPFQRRNSRALVGKVEIFRSMLECLRDSADGGVLTPTAVLCLKELYLLLYRSKILLDYCARSSKLWLLLQNHCVSGHFHDLCQEFSTLLDVFPVGEIGLSDDVREQVELLQRQSKRAKLFVDKKDDALRIRFFWFLNEFESGRVPDSKDLRCFFVDKLQMLDAKSCRVEVEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEVESQKRARKRLITQEIAETFFTVPKDFCCPITLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGVLLSHNRLVPNRALRNLIMQWCSAHGVPYDPPEGVDPSVEMFASACPSKASLVANRETAMLLIQQLADGSQVAKTVAAREIRLLAKNGKENRAFIAQAGAIPHLRKLLSSPNAVAQENSVTALLNLSIFERNKSMIVEEGCLGSIVEVLQFGHTTEARENAAATLFSLSAVHEYKKQIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVLALGNEGVSEEAAGALALIVRQPIGAMAVVREEAAVGGLIGIMRCGTARGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASDSASTRNTTSFVSDVSLPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12315g00008 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Vium12315g00008 714 Gene3D - 367 531 IPR011989 -
Vium12315g00008 714 SUPERFAMILY RING/U-box 276 361 - -
Vium12315g00008 714 Coils Coil 214 234 - -
Vium12315g00008 714 SUPERFAMILY ARM repeat 393 667 IPR016024 -
Vium12315g00008 714 CDD RING-Ubox_PUB 288 340 IPR045210 -
Vium12315g00008 714 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Vium12315g00008 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Vium12315g00008 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 515 557 IPR000225 GO:0005515
Vium12315g00008 714 FunFam RING-type E3 ubiquitin transferase 269 365 - -
Vium12315g00008 714 Gene3D - 532 663 IPR011989 -
Vium12315g00008 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Vium12315g00008 714 PANTHER U BOX DOMAIN-CONTAINING 58 670 - -
Vium12315g00008 714 SMART arm_5 504 544 IPR000225 GO:0005515
Vium12315g00008 714 SMART arm_5 420 460 IPR000225 GO:0005515
Vium12315g00008 714 SMART arm_5 545 583 IPR000225 GO:0005515
Vium12315g00008 714 SMART arm_5 461 502 IPR000225 GO:0005515
Vium12315g00008 714 FunFam RING-type E3 ubiquitin transferase 363 683 - -
Vium12315g00008 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Vium12315g00008 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12315g00008 Vium-Chr12315 86280 89026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12315g00008 1 714 U-box Gene Family AT1G29340 67.347 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12315g00008 - - gmx:100797462 1269.22