Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12315g00002 ATGGGAAGTGAAGAAGTGAAGGTGGTGAGCTTTTGGGTGAGTCCATTTGGGAAGAGGGTGGAGTGGGCCTTGAAGCTGAAGGGAATAGAATATGAATACATAGAAGAAGATATCTTCAATAAGAGCAATCTCCTTCTCCAGTTAAACCCGGTTTACAAGAAGGTTCCGGTTCTGGTCCATGCCCACAAACCCATCGCTGAATCATTCATCATCCTTCAATACATTGATGAAATTTGGAAGCAGTATCCACTGCTGCCACAACATCCTTATCAAAGAGCACTTGTTCACTTTTGGGCCGATTTTGGTGAGCGAAAGCTTTTGGATACATCATGGGTTGCAATGTGCAGCAGCGGGGATGACAAGGAAGAGGCTCTGAAAGTAGCTAGAGAAGCAATGGAGAAGATTGAAGAAGAGATAAAGGGAAAGAAGTTTTTTGGAGGAGACAACATTGGGTACCTTGACCTTGCCCTTGGATGGATCTCTTACTGGCTTCCTGTTTTTGAGGAAGTTGGATCCATGCAGATAATGGACCCACTGAAATTTCCAGCCACCACTGCATGGATAACCAATTTTCTGAGCCACCCTGTGATCAAGGACAACTTGCCCCCAAGAGACAACATGCTTGTTTACTTCCACAGTCGCAGAAAGGCACTTTCTTCATCTTTTCAGGGTTGGTTCAAGGTTTAG 687 0.4483 MGSEEVKVVSFWVSPFGKRVEWALKLKGIEYEYIEEDIFNKSNLLLQLNPVYKKVPVLVHAHKPIAESFIILQYIDEIWKQYPLLPQHPYQRALVHFWADFGERKLLDTSWVAMCSSGDDKEEALKVAREAMEKIEEEIKGKKFFGGDNIGYLDLALGWISYWLPVFEEVGSMQIMDPLKFPATTAWITNFLSHPVIKDNLPPRDNMLVYFHSRRKALSSSFQGWFKV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12315g00002 228 Gene3D - 85 222 - -
Vium12315g00002 228 FunFam Tau class glutathione S-transferase 85 221 - -
Vium12315g00002 228 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 207 IPR045073 -
Vium12315g00002 228 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
Vium12315g00002 228 CDD GST_C_Tau 89 211 IPR045074 GO:0004364|GO:0006749
Vium12315g00002 228 SUPERFAMILY Thioredoxin-like 6 105 IPR036249 -
Vium12315g00002 228 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Vium12315g00002 228 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 218 IPR010987 -
Vium12315g00002 228 CDD GST_N_Tau 6 79 - -
Vium12315g00002 228 Pfam Glutathione S-transferase, C-terminal domain 120 195 IPR004046 -
Vium12315g00002 228 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Vium12315g00002 228 Coils Coil 118 138 - -
Vium12315g00002 228 Gene3D Glutaredoxin 1 84 - -
Vium12315g00002 228 FunFam Tau class glutathione S-transferase 1 87 - -
Vium12315g00002 228 SFLD Glutathione Transferase (cytosolic) 2 220 IPR040079 -
Vium12315g00002 228 SFLD Main.3: Omega- and Tau-like 2 220 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12315g00002 Vium-Chr12315 24375 25952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12315g00002 2 219 Glutathione S-transferase Gene Family AT2G29420 42.202 4.27e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12315g00002 K00799 - tpra:123914566 380.563