Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12307g00003 ATGTATTGTTTATATAAAATAATTGCGGCAAGGCGAAAGGAATTGCAGGCTGAAATGAGAATGAGGATTTTGCAGTTGTGTTCTCCCATGGCTTCCCCATGGACATGCAGAGCTCCTCTGCAGATTGAACTGTGCAAGTTCTGGATTTTGAGAAAAAGGAGAGGTAGCAGTAATTTGCAGGTGCAGTGCTCCGGCAGACCCCCGAGAGCCCCTCCTGGAGTTGACACCAGAATCCACTGGGACAACGAGGATGAAGGGTGGATTGGAGGCGGAGATAGAGATAAAGATACCAAATCCAGCAACATGTTTGCCGACGGTGATGACTTGTCAGATTTGCTCCTCACTTCTTTAGGCTCTCATTACGAATTCTTAGGAGTATCACCCAATGCGGATTTAGAAGAAATCAAAGTTGCTTATAGGAAACTATCGAAGGAGTATCATCCTGACACAACCTCCCTCCCTCTGAAAAGTGCGTCGGAAAAATTCATGAAACTGAGAGAGGTTTACAACGTTCTGAGCGATGAAGAGAGTCGAAAATTTTATGATTGGAGCCTTGCTCAAGAGGCTGCAAGCCGACATGCAGAGAAGATGAGAATGAAATTAGAGGATCCTCGGGAGCAACAACTCAGGAACTGGGAACCTGTTCCCGACATGGTCGACCGCCTCGGTGGAAGGAATATGAAGCTCAGTGATCAGGCAGTCTCTGCCATCACTATTGATGTTTTTATCATTATTTTTTCCATATGCTGTATCATTTACGTAATCTTCTTTAGAGAACCATATTACTACTAG 792 0.447 MYCLYKIIAARRKELQAEMRMRILQLCSPMASPWTCRAPLQIELCKFWILRKRRGSSNLQVQCSGRPPRAPPGVDTRIHWDNEDEGWIGGGDRDKDTKSSNMFADGDDLSDLLLTSLGSHYEFLGVSPNADLEEIKVAYRKLSKEYHPDTTSLPLKSASEKFMKLREVYNVLSDEESRKFYDWSLAQEAASRHAEKMRMKLEDPREQQLRNWEPVPDMVDRLGGRNMKLSDQAVSAITIDVFIIIFSICCIIYVIFFREPYYY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12307g00003 263 PRINTS DnaJ domain signature 157 177 IPR001623 -
Vium12307g00003 263 PRINTS DnaJ domain signature 121 139 IPR001623 -
Vium12307g00003 263 PRINTS DnaJ domain signature 139 154 IPR001623 -
Vium12307g00003 263 ProSiteProfiles dnaJ domain profile. 119 185 IPR001623 -
Vium12307g00003 263 FunFam DnaJ homolog subfamily C member 4 109 206 - -
Vium12307g00003 263 ProSitePatterns Nt-dnaJ domain signature. 162 181 IPR018253 -
Vium12307g00003 263 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 52 261 IPR044618 -
Vium12307g00003 263 SMART dnaj_3 118 177 IPR001623 -
Vium12307g00003 263 CDD DnaJ 120 174 IPR001623 -
Vium12307g00003 263 Gene3D DnaJ domain 109 205 IPR036869 -
Vium12307g00003 263 SUPERFAMILY Chaperone J-domain 118 186 IPR036869 -
Vium12307g00003 263 Pfam DnaJ domain 120 182 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12307g00003 Vium-Chr12307 11644 13344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12307g00003 120 187 C2H2 Transcription Factor Family AT1G74250 37.500 1.57e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12307g00003 K23051 - gmx:100819309 337.421